Gene detail

Detail information of GWHGAAEX016431/evm.TU.scaffold_75.150

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0845	1.00E-46	Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116)
nr	gi\|743775118\|ref\|XP_010917934.1\|	2.77E-132	PREDICTED: nuclear pore complex protein NUP1-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9CAF4\|NUP1_ARATH	3.00E-47	Nuclear pore complex protein NUP1
trEMBL	tr\|M0SHT1\|M0SHT1_MUSAM	3.00E-62	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P25650_001}
trEMBL	tr\|M0SHT1\|M0SHT1_MUSAM	3.00E-16	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P25650_001}
TAIR	AT3G10650	1.00E-46	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000072	4589347	4620965	-

Transcript Sequence
>GWHTAAEX016431 CATATTTCCCCGACGATTTAGGGTTTCTGCGTCACAGCGTCGCTCTCATCCTCTTTTAAACCTTCGGTTGAAGTTTTGCTTCTCCCTCTTTCGTTTTCGTCTCCTTTGCCATCTCTTGACGCGTCGGGCTGAGCGGCTCCATTGATGGAGTTGCCTTCACAAGAAGGGGGCACTGGAGGTAAATTTCGGCGTCGTCAGGTCCGGCGACCATCGCCGTATGACCGACCGCCGTCGGCGGTGCGCGGGCTTCGTGGGTTAACGGAGGCATCTCGGAGCGGAAGTGGATGGCTCTCAAAGCTCGTTGATCCTGCGTCACGGTTCATCACGGGGAGCGCTTCCAAGCTATTTCAATCTGTGTTCCGTAAGAGGCTCACGGGGCCCCCAGATCCTGAAGGTTCAGAGCAAAACTTACAAGTTAAGCTACATGTTACTGAGGCAGTGGAAGTTGTTCAGAGCGAGTCACAGGTTCAAGATAAAGTAGATGGCCACAATCCAACAAAGAGTTTTGAGGCTGATGGATTATCTGAGATTGAGCAACTGTTGAAGGAAAAGAAATATACGAGGGCTCAAGTTGACTATCTGACAGGATTAATATGTTCAAGAACTGTTGAGCCAACTGGGCAAGAATCAGAATGCATTAACGAGAAAATCCATGTTTCCAATGAAGGAGTTGGGATTCCTCGAGATGCTGTATCTTCTCCTGCAGAGATTGCCAAAGCATACATGAGTTCTAGATTTTCCCAAGCATCTTCAGCTATAGGTTTGCAGAGCCAAGAAATTCAGGAAGATAAAGGCTTGCGTGGTCCTATTCCTTCTGTTGCCAAACCACGTGATATGTCAGTTGCACCTCGATCTCTTTTGGGCTCTTTAGAAATTCGGGAACATTCAAGTGTGGGCTATTCTACTAATCCTCGTGGAAAACATGCCATATACAGAATGGCACGCTCTCCTTATTTCAGGCCCAACCTGTCAGCTAATATGAAGGTAAATGCATACACAACTAGTAGTATCCGTGGCCCTCCTGCTTTGTTGGCTTTAGGAAGCGCTTCAAAATCTGATGGGAGACAGGTCTTGAAACGGGATAGGTCATATTTAGATAATGAATATGGCTGTTTGGGTCCTATTCGTAGGATTCGTCAGAAATCTGGTTTAAATTCTTCATCTAGTGCAAGGGCTTTGTCTTCTAATAGTACCCATAGCTATCCGTTAATTCAATTTGATAAACATGATTCAAAGGAACCCACTTTTTCTCAGAAGGTTCTTTCCCCAAATGAGCTAAATTATGCCGGCTCAGGTTTACCAATTGAAAAAAATCGGGACAATAAAATGTCTTCACTTGTTCCTCCAGTTCCAATGCAATCAAGTGAGGCATGTAGAAAAATATTGGAGCATCTTGACAAAATTGTGCCTTCTCAGGAAGACAAGTGCAATAAGAAAGTTATGTTCATGAATGAATCACCTTCAAAGCTAACTACTGATATGCTTAATATTCGAGCGCTAAGAAGCATGGAGAATATTGAGGACTCGCAGTTTATCAATGTTATTGGTACATTAGGCTCTAGTAATGTAAAGGATCCTCAAAAAAGTATAGGTTCTCAATCAGAAAACCAAAAACTTGGCAAGGCATTGGATAATGACTCTTCAAAGCTAGACATACAGGAAGTTAAATTTGAAATGGCTTCTAATGGCGTGAACAAACAGGATGGTTTCAGCAAAATTTCCAGGCCCATTAGTAGTTCTGCTGATATCTCCAATGTCATTCCTGCCAAAGTTCCCACTCTTGGGAAACCTGCGTTTCAAATGATCGCTCCAGAGGAATTGCTTGAGATAGATGATGAGGAAGATGTAGTGGATGTTCTTGTTCAACCGACAGTGAGTACTTCTAAGACAGAATGTGAGATTGCAAAAACTGAAGCTTCTGTTTCTACCATTCCAGCACCAGAGCAGCCATTGTTGTCATTTTATAAGAATGCTATGATTTCTGATTCTAACAAAGAGTGCAGTTTTAGTTTTCCTGTTGCAACTGTGTCCAGTGGTCTTTCTACACCATCTCTTATGCCAACTATACCAATCCAATCACATGATAAGTTTCCATCTAGAATCGAACAATCAGCTGCTCCTGCATTTGTGTTTGGTGATCGGAATTCTGGTGCAGTAATCCCTTCACCAACCATAGTTTTGTCTAATGATGCTTCTATTGAGTCTAAACCGGATCAAAGGCTTGATAGCAAGATTCTTTCAGAAAATACAGACCCATTCAGCGGTTCAAAGATATTTGCAGATGGTCTGCACAAAGATTCTGTAATGGTTGCCATGTCTGGAAAATCTTCATCTGCTGATACTGACACCATTAATTTTGGTTCTTCAATAACTTCAGATACCCAGAGTAATAGCTCTGTACATCGATCTTCATCGCCTTCACCATTTTCTGCTTCTACACCAGTGGAAATGCTCAGATTGCCTGTGATCAAATTCTCTTCTGACAGCAGTATGACATCCGCCAGTTCAAGCAGCCCAGCTATTTCATCTGCTTTACCGACATGTTCCTCTTCAGCTACTTTCAAATTTGGAGCTTCCTCATCATCTTCTCCTGTTTCTATTTCTCTGTCATCCGATACGTCTAATTCTGTGAATACACAGGGAAATATGTTAAGCAAATCTTCATTTGGATCATTTGTTCTTCCTACAACACAGGCTGTGTCATCATTTATAAGCACAGGAAACAATTCCACTGCTTTTATACAGTCGTCTCCTTTTCCTGATTCTGGAAGCACTCGTCCTGTTGAAACAATGCCCTTTTCAAGCATGAGCAGGGCTTCTAATTCTCCACCAAAAATGAGTTCCACTTTCTCAGGGCTATCCAGCAGCGGTTGCAGTTTTGCCGCATTGCCCGCAATTTCAACTAAAGCTACTGATCCTTTTACTTCTAGCACAAGTGTTTCATTAGCCAGCAGCAGCTCTCAGAAATTCGGTACAATTTTTGATGCTGGTGGAGGATCTTTGACACAACCTAGTAGCAGCAATGCAATCCTTTCTCAGAGTTCAGGAATTCAGTCAAGTTCTTTTTCTTCATCCGCCAAATTAGGGTCAAGCAGCTCTTCCGTTGCCATGTTTAGTAACCCCTCATCATACTCAGCTTTTGGATCGAATAAATTATCTTCAGCGAGATCTGAGCAGGTGCTATTTGGCACTGCAAATCAGAGTGCAAAACCTTTTGATTCAACTTCCAGTTTCTCTATTTCCACTGCTGCTGCTTCTACAGCTTCGAGTTCGGGATTTCCCTTCTCCTCTGTCGCTGGTGTGTCTGGTGCAAGCCCTCCATTCTTCTTTTCTTCAACCACCAGCACATCAACTTTGAATTCTGGGCACTCCTTTCCGATTTCCTCCGGTACTTCAAGCTCCAGTTTCTCTTTTACTTCTAGTGCGAGTTCTTCGAACCCAGCAGGAAATATGTTTGCTACATCTGGCCTGTTTGGCAACAGATCTCTGGGTTTGTCATCTTCCAGTTCTAGTTCTAACTTCGGTTCTTCGCCATCAGTGGGATTTTCTTTCGGACTCAGGCCTCCTGCAAGCGTTTCATCCTTCAGCACCGGTTCTTTGTCTGGACCTGCCTTCTCATTTACTTCATCAGGCATGACTATGTCGGCTGCAACTGTTGCACCCACTTTCACCATTCCAAGCGCATCCGGAGGTTTCACTTCTGCATCTCAGAATAATGACCACATGAGTGTTGAGGATACCATGGCTGATGATACCACCAACCCATCCCCAGTGTCAATGGTTCCTACTTTTGGGCATTCCAGCAGTGCACAATCACCAAATTTTGTATTTGGCTCTGGAGCATCTCTCCCTGGGGGAGCAGTGGCCCCCTTTCAATTTGGCGGCCATCAGAATCATCTAGCCCATCAAAATCCCAATCCGTTTCAGGCAGGCAGCAACCTCGAGTTTCCTCCCGGAGGGAGCTTTTCTTTGGGCAGTGGAGGTGGTGATAAGGCCGCACGAAAAATCGTGAAAGTTAGGCGCGATAAGGCTCGGAGGAAGTAGAGGGATTAAAGTTTTTTCATGGTCTTGACATTTTCGAGAAAAAAGAAATTTCCAAGGTGTGAAAGAGCGGATGCCGGAGTCGACTTGGAGAGGTGCAAGGCTGTGCTGCAGAATCGGCGATCAATCTCATCTTGGCTTTCATTATGATGTGGATTGCGGGAACCGTTCCCCACTGTTTTTGAGTGATATGAGAGCTTGTTTGTACAAATTGAAGGTGCATTGATTAAGTTAGTTGTATTAACACTTGTAACATGTTTTTGATATCAATAATGAACTCTATGTTATTGCCTAATCTTTTTGTATTCAAGAATTTTGTTTGTGTGAGGCTCACTTGAATTTTTTGATAATTATTATTATTTTTTATTAATTTTTTGCATTTTTCCTTATAACACTTAT

Network for GWHGAAEX016431

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX016431
MELPSQEGGTGGKFRRRQVRRPSPYDRPPSAVRGLRGLTEASRSGSGWLSKLVDPASRFITGSASKLFQSVFRKRLTGPPDPEGSEQNLQVKLHVTEAVEVVQSESQVQDKVDGHNPTKSFEADGLSEIEQLLKEKKYTRAQVDYLTGLICSRTVEPTGQESECINEKIHVSNEGVGIPRDAVSSPAEIAKAYMSSRFSQASSAIGLQSQEIQEDKGLRGPIPSVAKPRDMSVAPRSLLGSLEIREHSSVGYSTNPRGKHAIYRMARSPYFRPNLSANMKVNAYTTSSIRGPPALLALGSASKSDGRQVLKRDRSYLDNEYGCLGPIRRIRQKSGLNSSSSARALSSNSTHSYPLIQFDKHDSKEPTFSQKVLSPNELNYAGSGLPIEKNRDNKMSSLVPPVPMQSSEACRKILEHLDKIVPSQEDKCNKKVMFMNESPSKLTTDMLNIRALRSMENIEDSQFINVIGTLGSSNVKDPQKSIGSQSENQKLGKALDNDSSKLDIQEVKFEMASNGVNKQDGFSKISRPISSSADISNVIPAKVPTLGKPAFQMIAPEELLEIDDEEDVVDVLVQPTVSTSKTECEIAKTEASVSTIPAPEQPLLSFYKNAMISDSNKECSFSFPVATVSSGLSTPSLMPTIPIQSHDKFPSRIEQSAAPAFVFGDRNSGAVIPSPTIVLSNDASIESKPDQRLDSKILSENTDPFSGSKIFADGLHKDSVMVAMSGKSSSADTDTINFGSSITSDTQSNSSVHRSSSPSPFSASTPVEMLRLPVIKFSSDSSMTSASSSSPAISSALPTCSSSATFKFGASSSSSPVSISLSSDTSNSVNTQGNMLSKSSFGSFVLPTTQAVSSFISTGNNSTAFIQSSPFPDSGSTRPVETMPFSSMSRASNSPPKMSSTFSGLSSSGCSFAALPAISTKATDPFTSSTSVSLASSSSQKFGTIFDAGGGSLTQPSSSNAILSQSSGIQSSSFSSSAKLGSSSSSVAMFSNPSSYSAFGSNKLSSARSEQVLFGTANQSAKPFDSTSSFSISTAAASTASSSGFPFSSVAGVSGASPPFFFSSTTSTSTLNSGHSFPISSGTSSSSFSFTSSASSSNPAGNMFATSGLFGNRSLGLSSSSSSSNFGSSPSVGFSFGLRPPASVSSFSTGSLSGPAFSFTSSGMTMSAATVAPTFTIPSASGGFTSASQNNDHMSVEDTMADDTTNPSPVSMVPTFGHSSSAQSPNFVFGSGASLPGGAVAPFQFGGHQNHLAHQNPNPFQAGSNLEFPPGGSFSLGSGGGDKAARKIVKVRRDKARRK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	118.950
SRP064423	SRR2545915	Juvenile tuber	145.620
SRP108465	SRR5643513	five period of Gastrodia elata	34.350
	SRR5643514	five period of Gastrodia elata	29.120
	SRR5643515	five period of Gastrodia elata	26.150
	SRR5643524	five period of Gastrodia elata	26.100
	SRR5643525	five period of Gastrodia elata	22.690
	SRR5643528	five period of Gastrodia elata	19.250
	SRR5643658	five period of Gastrodia elata	25.190
	SRR5643659	five period of Gastrodia elata	37.690
	SRR5643660	five period of Gastrodia elata	43.270
	SRR5643661	five period of Gastrodia elata	35.930
	SRR5643662	five period of Gastrodia elata	35.290
	SRR5643663	five period of Gastrodia elata	43.090
	SRR5643664	five period of Gastrodia elata	49.450
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	70.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	62.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	53.810
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	79.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	61.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	83.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	69.340
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	64.620
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.140
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	48.650
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.920
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.920
SRP279888	Gastro	Gastrodia elata tuber	41.96
	Juven	Juvenile tuber	42.35
	Mother_Gastro	Mother tuber of Gastrodia elata	20.72
	Mother_Juven	Mother tuber of Juvenile	37.53