Gene detail

Detail information of GWHGAAEX016435/evm.TU.scaffold_75.155

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434395224\|ref\|YP_007130171.1\|	2.00E-10	beta-Ig-H3/fasciclin [Gloeocapsa sp. PCC 7428]
KOG	KOG1437	0	Fasciclin and related adhesion glycoproteins
nr	gi\|743846798\|ref\|XP_010938934.1\|	0	PREDICTED: LOW QUALITY PROTEIN: fasciclin-like arabinogalactan protein 17 [Elaeis guineensis]
Swissprot	tr\|Q66GR0\|FLA17_ARATH	0	Fasciclin-like arabinogalactan protein 17 (Precursor)
trEMBL	tr\|Q06I80\|Q06I80_WHEAT	0	Fasciclin-like protein FLA26 {ECO:0000313\|EMBL:ABI95416.1}
TAIR	AT5G06390	0	FASCICLIN-like arabinogalactan protein 17 precursor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000072	4684340	4687133	-

Transcript Sequence
>GWHTAAEX016435 CAACTTTTCCTATAATTAATGTCCCGATGCTACAAAAATACTTTAACCCAATCAACATTATTCAAATGTGAGTAAGGAAGTTCATGAACATATTAGATGATTATATATAAGACTCTCACATGTCCATATTTTTTTTGGCTATTTTCTTAACATTACAAAGTATTATATTTCTACTTACCTCATTTTTCTCGTGTAAATAATGCCTAATAAAGTTTTGAAAATTGAAATGACATTTTCCAATTTCATATCGTCACCGGATCGTACAGTTAATTCCGGGCAGCAGCCCTGCGGTCGTGCCACCGACGATAGCCAGCTTGTTCGGCGACCTCTTTACAGCCACGTGTCCATTTCTTTCCCGCCCTTTTAAAAAACATATAAAACGGTGCGAAGGTCTCGCAATTTCCCAGCCACCTCCTGCTTCCTTGCTCACTAAGCCGAAGAAGGCAGAGGAGGAGGATCGCAATAAAGAAGAATTGACCTCCATGGATCCTCCATACCATGCTCTCCTCCTCTTCTTCGTCATCTCTTTCCTCGTCCTCGCCTCCACTGGTCTGGCATTGTCGTCCACTCAGCAGAACTCGACTTCCTCCGCATCCGTCGGCCAAGTCAACTCCAATTCCGTCCTCGTGGCCCTGCTCGACTCTCGCTACACCGAGATAGCAGAGCTCGTCGAGAAAGCCTTCCTACTTCATACACTAGAAGATGCAGTCGGTCGCCATAATCTCACCGTCTTCGCCCCTCTCAACGATGCACTAGAGCGCGACCTCGATCCCGACTTCAAACGCTTCATCTTCGAACCCCGCAATCTCAGGTCCCTTCAATCCCTCCTTCTCTTCCATTTCCTCCCTTCCCGCATCTCCCACAGTTCCTTCCCATCATCCAGCCTCCTCACCCTCTCCGGAGACCAGATCTCTCTTTCCTCGTCCAGATCCGGCCAAAACCGCGCCGACCTCGCCGCCATCATACACCCCGACTCAATCCTGCGCCCGGATGGCATCATCCACGGCATAGATCGGCTTCTTGTTCCCAGATCCGTGCAAGAGGACTTCAACCGGAGGCGAAATCTGGTGGATATCTCAGCCGTGTTGCCCACCGGCGCTCCTGAAGTCGATCCACGCACCCACCGTCTCAAGAAGACCGCGCTCCATTCCCCTGCTGGATCCCCTCCCGCCCTCCCGATCTACGATGCCATGGCTCCTGGACCTTCAATCGCCCCCGCCCCTGCTCCAGGACCCGGATCCGGCAAGCACTGGTTCGACGGCCACCGTCAGATCAAGGATTTCATCCAAACCCTAATCCTTTACGGGGGCTACAACGAATTCGCCGACATTCTCGTCAATCTGACCTCCCTTGCTACCGAGATGGGCCGATTGGTATCTGAGGGGTACGTGCTCACTGTCCTCTCCCCAAACGACGAAGCCATGGCTAAGCTCACCGCCGATCAGCTCGGCGAGCCCGGCGCGCCGGAGCAGATTATCTACTACCATCTGATTCCCGAGTATCAGACGGAGGAGAGCATGTACAATGCGGTTCGGCGGTTCGGGAAAGTGCGCTATGACACGCTGCGGCTTCCTCGGAAGATCGTCGCGAGGGAGGTCGACGGATCGGTGAAGTTCGGGCAGGGCTCCGGGTCGGCTTATCTTTTCGATCCCGACATCTACACCGATGGGAGGATCTCGGTGCAAGGGATTGATGCGGTGCTGTTCCCGCCCGAGGAGGAGCAGTCAGCCTCGCCCGTCGGCAGTAAGGTGAAGGATTCGAGTTCCACGCTGAATCGAGGTGAGTGCTTTGTTATTCTGTTCCCCGAATTTGGATGCAATGCCGTTCCTTTCCGGTGGCCGGAAATCGATTTCAGCCGCCATAAAGCGATTTTCCTGCAGCCGGAGGTCGATTTTTGGCCGTCAGAAATCGATTTCGGGCTGCCGGAAACGGTGTGGAGCGGAGGCGATGCTTTCTTTGGCGGTGATTTAGTGTCGGTGATTGCATCCCGTTAAATGTTTTTTTTTTATGAATATAATTTCGGGTAAAGTTTTCGTTGCTTAGTGCCTGTGAACTGGCATAACAGTGTCGGTGGTCTGGATTTAGTAAGAGAGCAATACTCGATAGTTATCTCTACAGGTTTATTTTAATTTTAATAAACGTTTAAAAATAAAATAAAATTCTTTATAAAAATATATACTTATATAAATAAAATTGATTTTCTTAATAAATATATATACATATAAAAATATATACTTGTAAAATTAAGCTAATTTATTAAATTTAAATAGGAAATTTTAAAAGTTAATTTAATATTTAGATATGTAAAAGTGTGAAAAATTAGTCCGTCAAAAATATATATGCATGCACTTTGCTTGTAGTTTCTTTTTTAAATTTGATAATTTAAAACTTAAATATGAAAATAAAATAATAATTAAGTTTATTATCCGTGTATTTAGGCATATATAAAAGATTATTAGTAACAGTTTGGTAAATGACATTTCTGATTGGTGGAATGCTCTTTTACATGTATAAGTATATATTAATTAATTTTTTTTTTAAAATATTGTTCTGATTGAATGGAATATTCAGTTGAAAGAAATTTGGTTTCAATGAAAAAAAAAAAAAACTAAACCTCAAAAAATGTATAGTTCCACATTTAACTATTTTCTTGACACTCCAAAAGTTAATTAAATATTTTGGTATTAATTAACAAGATTTTCGTCCTGTTGTATGTTGGGTTGTCTCCATCTCACCGTGATTGACAGCCGGTCTATTCTGGCCAAGCCTTTTTATTTTATTATATATATATATA

Network for GWHGAAEX016435

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02469.21	Fasciclin	55	182	3.00E-17
PF02469.21	Fasciclin	288	409	7.00E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.630
SRP064423	SRR2545915	Juvenile tuber	42.200
SRP108465	SRR5643513	five period of Gastrodia elata	60.930
	SRR5643514	five period of Gastrodia elata	74.410
	SRR5643515	five period of Gastrodia elata	93.700
	SRR5643524	five period of Gastrodia elata	67.350
	SRR5643525	five period of Gastrodia elata	75.100
	SRR5643528	five period of Gastrodia elata	59.020
	SRR5643658	five period of Gastrodia elata	174.340
	SRR5643659	five period of Gastrodia elata	97.170
	SRR5643660	five period of Gastrodia elata	83.900
	SRR5643661	five period of Gastrodia elata	111.840
	SRR5643662	five period of Gastrodia elata	102.860
	SRR5643663	five period of Gastrodia elata	110.120
	SRR5643664	five period of Gastrodia elata	72.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	73.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	50.220
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	51.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	50.350
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	50.350
SRP279888	Gastro	Gastrodia elata tuber	73.61
	Juven	Juvenile tuber	11.83
	Mother_Gastro	Mother tuber of Gastrodia elata	2.12
	Mother_Juven	Mother tuber of Juvenile	2.70