Detail information of GWHGAAEX016436/evm.TU.scaffold_75.157


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08006.00E-28FOG: Predicted E3 ubiquitin ligase
nrgi|672109440|ref|XP_008790136.1|5.94E-168PREDICTED: E3 ubiquitin-protein ligase RHF2A [Phoenix dactylifera]
Swissprottr|Q9ZT42|RHF2A_ARATH1.00E-135E3 ubiquitin-protein ligase RHF2A
trEMBLtr|J3N948|J3N948_ORYBR1.00E-157Uncharacterized protein {ECO:0000313|EnsemblPlants:OB11G23340.1}
TAIRAT4G142206.00E-28RING-H2 group F1A

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007247057514721490-
Transcript Sequence

Network for GWHGAAEX016436

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_227694.70E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms157.110
SRR2545915Juvenile tuber110.170
SRP108465SRR5643513five period of Gastrodia elata58.350
SRR5643514five period of Gastrodia elata59.710
SRR5643515five period of Gastrodia elata60.050
SRR5643524five period of Gastrodia elata61.660
SRR5643525five period of Gastrodia elata100.380
SRR5643528five period of Gastrodia elata95.610
SRR5643658five period of Gastrodia elata136.090
SRR5643659five period of Gastrodia elata56.960
SRR5643660five period of Gastrodia elata61.270
SRR5643661five period of Gastrodia elata48.660
SRR5643662five period of Gastrodia elata68.890
SRR5643663five period of Gastrodia elata64.430
SRR5643664five period of Gastrodia elata74.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_171.910
SRR6049655Rhizomagastrodiae_C368-T10_good_1106.900
SRR6049656Rhizomagastrodiae_C368-T07_good_164.150
SRR6049657Rhizomagastrodiae_C368-T07_good_184.750
SRR6049658Rhizomagastrodiae_C368-T04_good_198.370
SRR6049659Rhizomagastrodiae_C368-T04_good_1114.700
SRR6049660Rhizomagastrodiae_C368-T01_good_187.460
SRR6049661Rhizomagastrodiae_C368-T04_good_180.990
SRR6049662Rhizomagastrodiae_C368-T01_good_148.190
SRR6049663Rhizomagastrodiae_C368-T01_good_161.230
SRR6049664Rhizomagastrodiae_C368-T10_good_157.550
SRR6049665Rhizomagastrodiae_C368-T10_good_157.550
SRP279888GastroGastrodia elata tuber 120.35
JuvenJuvenile tuber113.61
Mother_GastroMother tuber of Gastrodia elata 103.65
Mother_JuvenMother tuber of Juvenile 134.40