Detail information of GWHGAAEX016448/evm.TU.scaffold_76.11


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG47912.00E-42Uncharacterized conserved protein
nrgi|743769236|ref|XP_010914899.1|2.04E-102PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X1 [Elaeis guineensis]
Swissprottr|Q6AT25|C3H34_ORYSJ3.00E-47Zinc finger CCCH domain-containing protein 34
trEMBLtr|B9SEP4|B9SEP4_RICCO2.00E-77Nucleic acid binding protein, putative {ECO:0000313|EMBL:EEF37903.1}
TAIRAT2G021602.00E-42CCCH-type zinc finger family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000077461228482044+
Transcript Sequence

Network for GWHGAAEX016448

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15663.4zf-CCCH_37624.50E-11
PF14608.5zf-CCCH_2831031.6
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.840
SRR2545915Juvenile tuber15.280
SRP108465SRR5643513five period of Gastrodia elata16.540
SRR5643514five period of Gastrodia elata13.700
SRR5643515five period of Gastrodia elata14.880
SRR5643524five period of Gastrodia elata14.080
SRR5643525five period of Gastrodia elata19.790
SRR5643528five period of Gastrodia elata16.640
SRR5643658five period of Gastrodia elata12.840
SRR5643659five period of Gastrodia elata20.940
SRR5643660five period of Gastrodia elata21.670
SRR5643661five period of Gastrodia elata22.200
SRR5643662five period of Gastrodia elata23.940
SRR5643663five period of Gastrodia elata25.170
SRR5643664five period of Gastrodia elata17.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.930
SRR6049655Rhizomagastrodiae_C368-T10_good_116.370
SRR6049656Rhizomagastrodiae_C368-T07_good_117.140
SRR6049657Rhizomagastrodiae_C368-T07_good_115.080
SRR6049658Rhizomagastrodiae_C368-T04_good_115.450
SRR6049659Rhizomagastrodiae_C368-T04_good_117.220
SRR6049660Rhizomagastrodiae_C368-T01_good_118.370
SRR6049661Rhizomagastrodiae_C368-T04_good_117.200
SRR6049662Rhizomagastrodiae_C368-T01_good_116.680
SRR6049663Rhizomagastrodiae_C368-T01_good_119.100
SRR6049664Rhizomagastrodiae_C368-T10_good_117.140
SRR6049665Rhizomagastrodiae_C368-T10_good_117.140
SRP279888GastroGastrodia elata tuber 23.42
JuvenJuvenile tuber24.31
Mother_GastroMother tuber of Gastrodia elata 19.38
Mother_JuvenMother tuber of Juvenile 21.89