Detail information of GWHGAAEX016456/evm.TU.scaffold_76.25


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08002.00E-27FOG: Predicted E3 ubiquitin ligase
nrgi|672137207|ref|XP_008792321.1|2.70E-83PREDICTED: uncharacterized protein LOC103708969 [Phoenix dactylifera]
Swissprottr|Q8LPN7|RNG1L_ARATH3.00E-11E3 ubiquitin-protein ligase RING1-like
trEMBLtr|K3ZWD9|K3ZWD9_SETIT3.00E-41Uncharacterized protein {ECO:0000313|EnsemblPlants:Si030921m}
TAIRAT3G587202.00E-27RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007713053731309132-
Transcript Sequence

Network for GWHGAAEX016456

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_21742161.20E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.510
SRR2545915Juvenile tuber2.390
SRP108465SRR5643513five period of Gastrodia elata47.920
SRR5643514five period of Gastrodia elata33.540
SRR5643515five period of Gastrodia elata12.120
SRR5643524five period of Gastrodia elata20.860
SRR5643525five period of Gastrodia elata75.890
SRR5643528five period of Gastrodia elata73.740
SRR5643658five period of Gastrodia elata30.670
SRR5643659five period of Gastrodia elata4.280
SRR5643660five period of Gastrodia elata0.640
SRR5643661five period of Gastrodia elata2.340
SRR5643662five period of Gastrodia elata3.780
SRR5643663five period of Gastrodia elata3.330
SRR5643664five period of Gastrodia elata3.270
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_138.870
SRR6049655Rhizomagastrodiae_C368-T10_good_1117.770
SRR6049656Rhizomagastrodiae_C368-T07_good_139.800
SRR6049657Rhizomagastrodiae_C368-T07_good_139.950
SRR6049658Rhizomagastrodiae_C368-T04_good_124.110
SRR6049659Rhizomagastrodiae_C368-T04_good_127.490
SRR6049660Rhizomagastrodiae_C368-T01_good_124.790
SRR6049661Rhizomagastrodiae_C368-T04_good_129.770
SRR6049662Rhizomagastrodiae_C368-T01_good_142.970
SRR6049663Rhizomagastrodiae_C368-T01_good_119.190
SRR6049664Rhizomagastrodiae_C368-T10_good_169.850
SRR6049665Rhizomagastrodiae_C368-T10_good_169.850
SRP279888GastroGastrodia elata tuber 2.10
JuvenJuvenile tuber12.62
Mother_GastroMother tuber of Gastrodia elata 4.54
Mother_JuvenMother tuber of Juvenile 3.07