Detail information of GWHGAAEX016464/evm.TU.scaffold_76.39
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 2.00E-39 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| KOG | KOG0619 | 2.00E-150 | FOG: Leucine rich repeat |
| nr | gi|672184471|ref|XP_008812547.1| | 2.05E-164 | PREDICTED: protein TOO MANY MOUTHS [Phoenix dactylifera] |
| Swissprot | tr|Q9SSD1|TMM_ARATH | 9.00E-59 | Protein TOO MANY MOUTHS (Precursor) |
| trEMBL | tr|A5CBP2|A5CBP2_VITVI | 3.00E-152 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN62290.1} |
| TAIR | AT2G42800 | 2.00E-150 | receptor like protein 29 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000077 | 2471889 | 2473642 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016464
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13855.5 | LRR_8 | 169 | 227 | 3.20E-08 |
| PF13855.5 | LRR_8 | 242 | 298 | 3.90E-07 |
| PF13855.5 | LRR_8 | 311 | 371 | 1.30E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.910 |
| SRR2545915 | Juvenile tuber | 2.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.260 |
| SRR5643514 | five period of Gastrodia elata | 4.950 | |
| SRR5643515 | five period of Gastrodia elata | 4.050 | |
| SRR5643524 | five period of Gastrodia elata | 4.700 | |
| SRR5643525 | five period of Gastrodia elata | 4.000 | |
| SRR5643528 | five period of Gastrodia elata | 2.440 | |
| SRR5643658 | five period of Gastrodia elata | 4.650 | |
| SRR5643659 | five period of Gastrodia elata | 5.870 | |
| SRR5643660 | five period of Gastrodia elata | 4.890 | |
| SRR5643661 | five period of Gastrodia elata | 4.770 | |
| SRR5643662 | five period of Gastrodia elata | 5.120 | |
| SRR5643663 | five period of Gastrodia elata | 6.610 | |
| SRR5643664 | five period of Gastrodia elata | 5.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.960 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.020 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.64 |
| Juven | Juvenile tuber | 3.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.69 | |
| Mother_Juven | Mother tuber of Juvenile | 1.77 |