Detail information of GWHGAAEX016470/evm.TU.scaffold_76.47


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743756344|ref|XP_010916331.1|1.11E-35PREDICTED: LOW QUALITY PROTEIN: cyclic phosphodiesterase-like [Elaeis guineensis]
Swissprottr|O04147|CPD_ARATH2.00E-24Cyclic phosphodiesterase
trEMBLtr|A0A097PLM2|A0A097PLM2_9ASPA4.00E-34RNA ligase/cyclic nucleotide phosphodiesterase family protein {ECO:0000313|EMBL:AIU48935.1} (Fragment)
TAIRAT4G189307.00E-24RNA ligase/cyclic nucleotide phosphodiesterase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007727088712709200-
Transcript Sequence

Network for GWHGAAEX016470

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07823.10CPDase6921.30E-08
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0004112Molecular Functioncyclic-nucleotide phosphodiesterase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms98.890
SRR2545915Juvenile tuber97.950
SRP108465SRR5643513five period of Gastrodia elata93.390
SRR5643514five period of Gastrodia elata83.240
SRR5643515five period of Gastrodia elata96.270
SRR5643524five period of Gastrodia elata80.260
SRR5643525five period of Gastrodia elata140.670
SRR5643528five period of Gastrodia elata103.910
SRR5643658five period of Gastrodia elata106.220
SRR5643659five period of Gastrodia elata96.670
SRR5643660five period of Gastrodia elata100.480
SRR5643661five period of Gastrodia elata107.440
SRR5643662five period of Gastrodia elata125.220
SRR5643663five period of Gastrodia elata88.220
SRR5643664five period of Gastrodia elata114.440
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_191.630
SRR6049655Rhizomagastrodiae_C368-T10_good_1246.250
SRR6049656Rhizomagastrodiae_C368-T07_good_179.100
SRR6049657Rhizomagastrodiae_C368-T07_good_168.810
SRR6049658Rhizomagastrodiae_C368-T04_good_179.640
SRR6049659Rhizomagastrodiae_C368-T04_good_169.130
SRR6049660Rhizomagastrodiae_C368-T01_good_181.320
SRR6049661Rhizomagastrodiae_C368-T04_good_154.840
SRR6049662Rhizomagastrodiae_C368-T01_good_144.540
SRR6049663Rhizomagastrodiae_C368-T01_good_182.840
SRR6049664Rhizomagastrodiae_C368-T10_good_1116.120
SRR6049665Rhizomagastrodiae_C368-T10_good_1116.120
SRP279888GastroGastrodia elata tuber 49.63
JuvenJuvenile tuber50.24
Mother_GastroMother tuber of Gastrodia elata 47.22
Mother_JuvenMother tuber of Juvenile 57.61