Detail information of GWHGAAEX016472/evm.TU.scaffold_76.52
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|269839716|ref|YP_003324408.1| | 3.00E-62 | glycoside hydrolase family protein [Thermobaculum terrenum ATCC BAA-798] |
| nr | gi|743756264|ref|XP_010915914.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: mannan endo-1,4-beta-mannosidase 2-like [Elaeis guineensis] |
| Swissprot | tr|Q7Y223|MAN2_ARATH | 2.00E-177 | Mannan endo-1,4-beta-mannosidase 2 (Precursor) |
| trEMBL | tr|E0CTE2|E0CTE2_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI21857.3} |
| TAIR | AT4G28320 | 1.00E-174 | Glycosyl hydrolase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000077 | 3233901 | 3235985 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016472
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00150.17 | Cellulase | 50 | 376 | 1.30E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH5 |
| Carbohydrate-Active enzymes Family | GH5 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K19355 | MAN | Metabolic pathways | map01100 |
| Fructose and mannose metabolism | map00051 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.710 |
| SRR2545915 | Juvenile tuber | 8.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.670 |
| SRR5643514 | five period of Gastrodia elata | 13.470 | |
| SRR5643515 | five period of Gastrodia elata | 9.680 | |
| SRR5643524 | five period of Gastrodia elata | 11.220 | |
| SRR5643525 | five period of Gastrodia elata | 7.200 | |
| SRR5643528 | five period of Gastrodia elata | 4.560 | |
| SRR5643658 | five period of Gastrodia elata | 12.260 | |
| SRR5643659 | five period of Gastrodia elata | 7.510 | |
| SRR5643660 | five period of Gastrodia elata | 5.670 | |
| SRR5643661 | five period of Gastrodia elata | 7.740 | |
| SRR5643662 | five period of Gastrodia elata | 3.200 | |
| SRR5643663 | five period of Gastrodia elata | 5.720 | |
| SRR5643664 | five period of Gastrodia elata | 1.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.670 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.19 |
| Juven | Juvenile tuber | 9.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.20 | |
| Mother_Juven | Mother tuber of Juvenile | 5.31 |