Detail information of GWHGAAEX016474/evm.TU.scaffold_76.54
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15901596|ref|NP_346200.1| | 3.00E-06 | glycosyl transferase family protein [Streptococcus pneumoniae TIGR4] |
| nr | gi|672116317|ref|XP_008781317.1| | 0 | PREDICTED: probable galacturonosyltransferase 3 [Phoenix dactylifera] |
| Swissprot | tr|Q0WQD2|GAUT3_ARATH | 0 | Probable galacturonosyltransferase 3 |
| trEMBL | tr|M0RQ60|M0RQ60_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P07300_001} |
| TAIR | AT4G38270 | 0 | galacturonosyltransferase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000077 | 3386538 | 3411812 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016474
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01501.19 | Glyco_transf_8 | 338 | 653 | 1.40E-88 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13648 | GAUT | Metabolic pathways | map01100 |
| Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016757 | Molecular Function | transferase activity, transferring glycosyl groups |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.510 |
| SRR2545915 | Juvenile tuber | 10.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.080 |
| SRR5643514 | five period of Gastrodia elata | 8.480 | |
| SRR5643515 | five period of Gastrodia elata | 8.080 | |
| SRR5643524 | five period of Gastrodia elata | 9.980 | |
| SRR5643525 | five period of Gastrodia elata | 14.580 | |
| SRR5643528 | five period of Gastrodia elata | 35.300 | |
| SRR5643658 | five period of Gastrodia elata | 36.390 | |
| SRR5643659 | five period of Gastrodia elata | 3.740 | |
| SRR5643660 | five period of Gastrodia elata | 3.010 | |
| SRR5643661 | five period of Gastrodia elata | 3.050 | |
| SRR5643662 | five period of Gastrodia elata | 2.440 | |
| SRR5643663 | five period of Gastrodia elata | 2.620 | |
| SRR5643664 | five period of Gastrodia elata | 2.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.850 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.47 |
| Juven | Juvenile tuber | 6.92 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.04 | |
| Mother_Juven | Mother tuber of Juvenile | 13.20 |