Gene detail

Detail information of GWHGAAEX016478/evm.TU.scaffold_76.59

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262196624\|ref\|YP_003267833.1\|	3.00E-16	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOG	KOG0149	5.00E-59	Predicted RNA-binding protein SEB4 (RRM superfamily)
nr	gi\|695058542\|ref\|XP_009417590.1\|	2.65E-92	PREDICTED: RNA-binding protein 24-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q03251\|RBG8_ARATH	1.00E-18	Glycine-rich RNA-binding protein 8
trEMBL	tr\|M0SVW9\|M0SVW9_MUSAM	2.00E-83	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P05400_001}
TAIR	AT1G22330	5.00E-59	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000077	3502903	3537798	+

Transcript Sequence
>GWHTAAEX016478 TATATATAATCTGTAGCTAAGGGATGAAGTGGTCGGCTCATTTCTCTCCCCCTTTTACCTGATTTTTTAATTGCAGTTGCCTTTCTGTTTTATCAAGCGAGGAACTGCTACAGCCAATATGCGGATGGCAGAATCCTTCATTCATTCACAATAGAAATACGGATTAGGCATCTGAAAGCTGTCACCGATTTTTTTTTTTCTATTCTTCTTTATAAGACTTACTTGCTTCTCCACTGTTTCTTCTCTCCCACTTTTCTCTCAGCTCTCCTTTTTTCTTCTTCTAATGGAAGGGGAAGGGGAAGGGAAGGAGAGGCGGAGGAAGAGAATCAGTACAGCGAACAATATTCTTCTTCTTCTCGTCCTTGTCTGAAAGAGAGGGAGAGAGATGGCGGCTAGTACGGGTGGGAACAGTCCTCAGCAGTATAGGTCGAGATTTGGGGACACGACTTTGACCAAAGTATTTGTGGGAGGGTTGGCGTGGGAAACCCCTAATGAAGAGCTCCGCAGATATTTCGAGCAGTTCGGAGACATCCTGGAAGCGGTGATTATAACTGATAAGAGCACCGGCAGATCCAAGGGCTATGGATTTGTGACGTTTCGTGAAGCGGAGTCTGCGAGACGGTCCGTAGCGGATCCGAACCCGTTAATTGACGGAAGGCGGGCTAACTGCAACATTGCTGCTCTGGGCCGACCTCGCCCTTCTCCTCCGCGAGGTCGGGCCCAAGTTGCAGGGAGCATCTTTCAAGGATCATCATCGCAAGCAGCCAGTACCACATACACCAGATTTCCTACTCAGTTGCCTCCTCCCCCACAAATGATCTACCCAACACCATATGGGTACATGACCTATCCTGCCGAATATGGGTATCAGCCGGGCATGTACAATCCTCAAATGGCATCACAATATTATCAACAGATGATGTATGGTGCAGCATCATCATCAAGCGTTAACGCCGCCCCCCAGCCATATAACTATTCCCAGATGAATTACATGATGCAAATGCAGTCAGCGAGGACGAGCTATCCACCATCCATGTTGCAAGCTCAACCTCATCGTCAGCCATATGGGCATCCTCAGCATCCCATGGGCCACATGGACGTGGAGGGGTATTCCTTCCCACCATCCATATTCTCTCATGGCCTTCAACTTCAATATCCACCTCATATAAGACAGTCATTGACAACCCCAGATTCTCAAGCTTCGCAACAGCCATCACCCACAAATGGTGGAAACATTGAGAGCTCCGATGTTTAAACACCTCTGACTAATTATTCTGACTTTCGGAGAGAAAGGAGGGGGATTTGATTATGTGCTTACTCGCTGGGAAGATTGCCACAGGCTCGGAAGAACACCAATCCAAAGTATATTTGCCGATGCCATCTTTTTCCAGAAAAAAAAAAAAGAAGAGAATTCCTTCTCAATTTTATTCTTTGCCATAAATTTCAGTACATTCCTATTTAATCACAGATTAAATTTTATAAATATCATGTGAATAAATTGATTTTTATTCCTACCAAATGTTGCGATTGTTTATTGGAAAAGAAAATAAATGCTAGGCTATCCATTTTAGTCTGCTAAGAGTAAGGTGCTTCAATTTGTTTGCAGGAGCTTCGTGGAGATACAATTGACGATAGAGATAGCACCATTACATCTCTGCACATTGAAAATGTGCATATGTAATAGTAGTTTTGCTATGTTTTCCAACCCATATCTTACTAATACTGTAGATATGATAATATAATTATAATTTTATGATTGTAGCAATGCACCTTAAATAGGTTCATTTTTATCAATGTTTCATACGATTCAATCCATAAAATTAGTATATATGTAGGCATGCAGAACACTGCATGCTTCATTTAGTGCATTTGCACATGCAAAACATGGGTGTGTTTATATGTGAGCACTGAAGCTTTGGAAATGTGCTTTGAACGAACCTCAGCTGCTTCTTTTATATATATATATAGTTCTCAA

Network for GWHGAAEX016478

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	25	82	9.20E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	100.170
SRP064423	SRR2545915	Juvenile tuber	108.950
SRP108465	SRR5643513	five period of Gastrodia elata	117.610
	SRR5643514	five period of Gastrodia elata	83.730
	SRR5643515	five period of Gastrodia elata	111.530
	SRR5643524	five period of Gastrodia elata	88.720
	SRR5643525	five period of Gastrodia elata	172.540
	SRR5643528	five period of Gastrodia elata	142.510
	SRR5643658	five period of Gastrodia elata	215.030
	SRR5643659	five period of Gastrodia elata	91.760
	SRR5643660	five period of Gastrodia elata	103.320
	SRR5643661	five period of Gastrodia elata	98.150
	SRR5643662	five period of Gastrodia elata	87.660
	SRR5643663	five period of Gastrodia elata	81.590
	SRR5643664	five period of Gastrodia elata	88.380
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	119.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	139.420
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	124.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	130.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	134.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	143.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	111.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	146.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	50.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	59.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	76.910
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	76.910
SRP279888	Gastro	Gastrodia elata tuber	106.29
	Juven	Juvenile tuber	48.37
	Mother_Gastro	Mother tuber of Gastrodia elata	121.81
	Mother_Juven	Mother tuber of Juvenile	67.07