Detail information of GWHGAAEX016485/evm.TU.scaffold_76.65
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|433638803|ref|YP_007284563.1| | 4.00E-32 | NOL1/NOP2/sun family putative RNA methylase [Halovivax ruber XH-70] |
| KOG | KOG2198 | 0 | tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily |
| nr | gi|743849672|ref|XP_010939687.1| | 0 | PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase isoform X2 [Elaeis guineensis] |
| trEMBL | tr|M0TIU9|M0TIU9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P19120_001} |
| TAIR | AT2G22400 | 0 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000077 | 3782710 | 3820513 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016485
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01189.16 | Methyltr_RsmB-F | 234 | 420 | 5.00E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008168 | Molecular Function | methyltransferase activity |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0016428 | Molecular Function | tRNA (cytosine-5-)-methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 38.980 |
| SRR2545915 | Juvenile tuber | 37.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 43.440 |
| SRR5643514 | five period of Gastrodia elata | 42.500 | |
| SRR5643515 | five period of Gastrodia elata | 40.580 | |
| SRR5643524 | five period of Gastrodia elata | 40.230 | |
| SRR5643525 | five period of Gastrodia elata | 38.200 | |
| SRR5643528 | five period of Gastrodia elata | 30.120 | |
| SRR5643658 | five period of Gastrodia elata | 37.210 | |
| SRR5643659 | five period of Gastrodia elata | 55.120 | |
| SRR5643660 | five period of Gastrodia elata | 64.050 | |
| SRR5643661 | five period of Gastrodia elata | 47.660 | |
| SRR5643662 | five period of Gastrodia elata | 43.830 | |
| SRR5643663 | five period of Gastrodia elata | 54.070 | |
| SRR5643664 | five period of Gastrodia elata | 48.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 40.440 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 46.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 34.650 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 31.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.990 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 50.66 |
| Juven | Juvenile tuber | 56.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 44.70 | |
| Mother_Juven | Mother tuber of Juvenile | 52.54 |