Detail information of GWHGAAEX016492/evm.TU.scaffold_76.79
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2487 | 3.00E-71 | RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 |
| nr | gi|672164392|ref|XP_008802071.1| | 2.87E-154 | PREDICTED: general transcription factor IIH subunit 3 isoform X3 [Phoenix dactylifera] |
| trEMBL | tr|E0CR79|E0CR79_VITVI | 1.00E-134 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI19033.3} |
| TAIR | AT1G18340_1 | 3.00E-71 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000077 | 4366012 | 4391783 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016492
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03850.13 | Tfb4 | 14 | 284 | 1.90E-81 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03143 | TFIIH3, GTF2H3, TFB4 | Basal transcription factors | map03022 |
| Nucleotide excision repair | map03420 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0006289 | Biological Process | nucleotide-excision repair |
| GO:0000439 | Cellular Component | core TFIIH complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.990 |
| SRR2545915 | Juvenile tuber | 12.260 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.980 |
| SRR5643514 | five period of Gastrodia elata | 10.910 | |
| SRR5643515 | five period of Gastrodia elata | 7.850 | |
| SRR5643524 | five period of Gastrodia elata | 9.610 | |
| SRR5643525 | five period of Gastrodia elata | 11.160 | |
| SRR5643528 | five period of Gastrodia elata | 10.520 | |
| SRR5643658 | five period of Gastrodia elata | 8.350 | |
| SRR5643659 | five period of Gastrodia elata | 14.880 | |
| SRR5643660 | five period of Gastrodia elata | 15.720 | |
| SRR5643661 | five period of Gastrodia elata | 14.870 | |
| SRR5643662 | five period of Gastrodia elata | 11.940 | |
| SRR5643663 | five period of Gastrodia elata | 14.920 | |
| SRR5643664 | five period of Gastrodia elata | 13.610 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.630 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.230 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.160 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.860 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.11 |
| Juven | Juvenile tuber | 20.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.72 | |
| Mother_Juven | Mother tuber of Juvenile | 18.25 |