Detail information of GWHGAAEX016493/evm.TU.scaffold_76.80
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1571 | 4.00E-84 | Predicted E3 ubiquitin ligase |
| nr | gi|743839160|ref|XP_010936923.1| | 3.61E-160 | PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Elaeis guineensis] |
| Swissprot | tr|Q7XI08|XB34_ORYSJ | 1.00E-07 | Probable E3 ubiquitin-protein ligase XBOS34 |
| trEMBL | tr|W9QIU9|W9QIU9_9ROSA | 5.00E-148 | Mitochondrial ubiquitin ligase activator of nfkb 1 {ECO:0000313|EMBL:EXB23815.1} |
| TAIR | AT1G54150 | 4.00E-84 | E3 Ubiquitin ligase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000077 | 4467814 | 4506786 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016493
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12483.7 | GIDE | 143 | 284 | 6.60E-30 |
| PF13920.5 | zf-C3HC4_3 | 335 | 380 | 2.20E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006996 | Biological Process | organelle organization |
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.550 |
| SRR2545915 | Juvenile tuber | 12.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.950 |
| SRR5643514 | five period of Gastrodia elata | 13.700 | |
| SRR5643515 | five period of Gastrodia elata | 12.670 | |
| SRR5643524 | five period of Gastrodia elata | 12.360 | |
| SRR5643525 | five period of Gastrodia elata | 10.360 | |
| SRR5643528 | five period of Gastrodia elata | 11.660 | |
| SRR5643658 | five period of Gastrodia elata | 13.710 | |
| SRR5643659 | five period of Gastrodia elata | 12.190 | |
| SRR5643660 | five period of Gastrodia elata | 12.800 | |
| SRR5643661 | five period of Gastrodia elata | 12.690 | |
| SRR5643662 | five period of Gastrodia elata | 13.120 | |
| SRR5643663 | five period of Gastrodia elata | 15.110 | |
| SRR5643664 | five period of Gastrodia elata | 14.560 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.320 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.320 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.26 |
| Juven | Juvenile tuber | 17.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.34 | |
| Mother_Juven | Mother tuber of Juvenile | 22.13 |