Detail information of GWHGAAEX016499/evm.TU.scaffold_77.6


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG22485.00E-1723'-5' exonuclease
nrgi|672142729|ref|XP_008795226.1|0PREDICTED: small RNA degrading nuclease 5 isoform X1 [Phoenix dactylifera]
Swissprottr|Q8L7M4|SDN5_ARATH0Small RNA degrading nuclease 5
trEMBLtr|M0SF66|M0SF66_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P16500_001}
TAIRAT5G258005.00E-172Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000075123024158353-
Transcript Sequence

Network for GWHGAAEX016499

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00929.23RNase_T2133852.30E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14570REX1, REXO1, RNH70 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.940
SRR2545915Juvenile tuber15.660
SRP108465SRR5643513five period of Gastrodia elata11.340
SRR5643514five period of Gastrodia elata13.680
SRR5643515five period of Gastrodia elata9.270
SRR5643524five period of Gastrodia elata12.350
SRR5643525five period of Gastrodia elata8.860
SRR5643528five period of Gastrodia elata9.410
SRR5643658five period of Gastrodia elata9.370
SRR5643659five period of Gastrodia elata9.970
SRR5643660five period of Gastrodia elata11.000
SRR5643661five period of Gastrodia elata9.710
SRR5643662five period of Gastrodia elata10.010
SRR5643663five period of Gastrodia elata12.210
SRR5643664five period of Gastrodia elata9.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.280
SRR6049655Rhizomagastrodiae_C368-T10_good_114.490
SRR6049656Rhizomagastrodiae_C368-T07_good_113.910
SRR6049657Rhizomagastrodiae_C368-T07_good_111.520
SRR6049658Rhizomagastrodiae_C368-T04_good_110.220
SRR6049659Rhizomagastrodiae_C368-T04_good_110.130
SRR6049660Rhizomagastrodiae_C368-T01_good_111.270
SRR6049661Rhizomagastrodiae_C368-T04_good_112.170
SRR6049662Rhizomagastrodiae_C368-T01_good_113.210
SRR6049663Rhizomagastrodiae_C368-T01_good_111.830
SRR6049664Rhizomagastrodiae_C368-T10_good_114.720
SRR6049665Rhizomagastrodiae_C368-T10_good_114.720
SRP279888GastroGastrodia elata tuber 16.68
JuvenJuvenile tuber12.83
Mother_GastroMother tuber of Gastrodia elata 10.28
Mother_JuvenMother tuber of Juvenile 14.21