Gene detail

Detail information of GWHGAAEX016513/evm.TU.scaffold_77.23

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2481	0	Protein required for normal rRNA processing
nr	gi\|672164153\|ref\|XP_008801945.1\|	0	PREDICTED: pescadillo homolog [Phoenix dactylifera]
Swissprot	tr\|A8JBB2\|PESC_CHLRE	1.00E-154	Pescadillo homolog {ECO:0000255\|HAMAP-Rule:MF_03028}
trEMBL	tr\|D7TWJ6\|D7TWJ6_VITVI	0	Pescadillo homolog {ECO:0000256\|HAMAP-Rule:MF_03028}
TAIR	AT5G14520	0	pescadillo-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000075	748625	782311	+

Transcript Sequence
>GWHTAAEX016513 CAGAGGTCACGTGACAAAAACGGACTAAACCTAATCGTAATCCTTCTGCATTACTGCAAGACGGCGCCCGGAGACGAAGGGCTCTAGGAGACGAAAACGGTGCCCTTGCTTGAAGAAAGCTTAGCGCATCCTCCACCGCCGTCTTCATTGAAGCTCGTCCCCGAAGATGCCTAAACATTATAGGCCTCCCGGAAAGAAGAAGGAGGGTGCTGCTGCCAGGTTTATCACGAGGAGTAAGGCGGTTAATCACCTTCAAGTCACTCTTCCACTCTTCAGGAAACTGTGCATTCTTAAGGGGATTTTTCCTCGAGAGCCAAAAAAGAAGATAGAGGGCAACCAAAAAACTTACTATCACACTAAAGATATCAATTTTCTTTTGCATGAGCCCTTGCTTGGGAAACTATGGGATATAAAAGCCTACAAGAAGAAAATTAAGAAGGCCCAAGGAAAGAAAAACAAAGAGCTGGTTGAGCGACTACTTGATCGCCGACCAACATATAAACTTGACAGATTAGTATTAGAACGGTATCCAACATTTGTTGATGCCCTTCGAGATCTGGATGATTGCCTCACTATGGTGCATCTTTTTGCTACATTACCTGCGGTTGAAAGTGAGCACATTCAAGTTGATCGTATTCATAATTGCAGAAGATTAAGTCATGAATGGCAAGCGTACATTTCAAGAACTCATTCGTTACGGAAAACTTTTATATCAGTCAAAGGCTTATATTATCAGGCAGAGGTTGAAGGGCAAAAAATTACATGGTTAACCCCGCACGCTATACAGCAAGTTTTGACGGATGATGTTGATTTTAATGTTATGCTTACATTTTTAGAATTCTATGAGGCTCTTTTAGGTTTTGTGAATTTCAGGCTTTATCATTCATTAAATGTTAAGTATCCTCCAATTCTTGATCCACGACTTGAAGCATTGGCAGCTGAGCTTTATGCCTTGTGTCGCTATATTGGTGCTGGTTCAAGAACATTGTCCGGAACTTCTCAAGCTGGTATATCTTCAGAGTCGGAGCAAACTGATAAGGAGAAAAAGAGTATAGATACTGAAGAGACTGACGTTAGATTGGCCCAGCTTCAACATCAGTTACCAGCAAATGAACCTGGAGCTTTGATGAATATGATGGAGGATGTAAATGATGCTAATGAAGAAGACCAGGATACAAAGGATTGCAAATCCCTTTTTAGAAATTTTAGGTTCTTTTTGAGTCGAGAGGTTCCAAGAGAGTCCTTGCTTTTCATAATTCCTGCATTTGGAGGTGTGGTTTCATGGGACGGTGATGGTGCTCCTTTCAGGGAAACAGATGAGGATATCACTCATCAGATTGTTGATAGGCCAGCTCTTGGTCATATATTTCTTTCTAGAGAATATGTTCAACCACAATGGGTCTATGATTGCATAAATGCTCGAATTGTACTACCAACCGACCAGTATTTAGTGGGAAGGGTGCCTCCGCCACATTTGTCACCATTTGTGGACAATGAGGCTGAAGGTTATGTTCCCGATTATGCCGAAACTATAAAACGTTTGCAGGCTTCTGCCAAGAGGCATGTTTTACCGTTGCCAGGCTTGGATACTTATGATTTGACCGATCCCCAACGCCTTTTGGCTGAAGGTGTTATTGATCGCTCAGAAGCTATTGAAGTTTCGGAGCAAAGAAAGCAGTTGCTTATGCTTGAGAAACAGTACCATGATGAGCTGAAAATGGAACTTCAGGGGGTCACTTTCTCTGCAGTATTATCTAGAGGAAATTCACAGGCCCCTGCTGGAGATGCAGTTGTTGAAGAAGATTCAGGCAATGTGTTGGATCAGGTTGCAGATGACGAAATTAATCTTTCCAAGGTTTCCATGTCTCGCAAACAGAGAGGGCTTATGGAAGCAATAGAGATTGGCAAGGGAAGGAAAAGAAGCAAGATTGAACTGCTCAAGAAGAGAAAGAAGAATGCAGAAGCAAACAGGAGCGGATGATATTATGGAGACCAAATACTGTTGTTGCTCGTTGTATGCATACACTTTTAGGGCATTTTAATTTTAAAAATCTTGCGTAGGACACTGTTAGGGCTTGTAGTTTTTTAGGCTCTTATCATAATTTTGTTGAATATCTAATTGTGCAAATTTCATGAATATGGTTTATCATAATTTAAATTAAATTCTTTTATGGAATATTAATGATTATCTTGTAGCCTGCATGCATTTCATCCATGCTTCATGACTAGTAACAAAACACTAACATATGCCAAGTTAGTAGGCATTGTTGCTAACATGCCTCTCCATATTTAGAA

Network for GWHGAAEX016513

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06732.10	Pescadillo_N	10	263	1.50E-112
PF16589.4	BRCT_2	341	428	2.90E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0042254	Biological Process	ribosome biogenesis
GO:0005730	Cellular Component	nucleolus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	123.150
SRP064423	SRR2545915	Juvenile tuber	100.900
SRP108465	SRR5643513	five period of Gastrodia elata	78.240
	SRR5643514	five period of Gastrodia elata	72.830
	SRR5643515	five period of Gastrodia elata	76.930
	SRR5643524	five period of Gastrodia elata	71.120
	SRR5643525	five period of Gastrodia elata	77.120
	SRR5643528	five period of Gastrodia elata	72.030
	SRR5643658	five period of Gastrodia elata	80.980
	SRR5643659	five period of Gastrodia elata	88.840
	SRR5643660	five period of Gastrodia elata	100.150
	SRR5643661	five period of Gastrodia elata	93.820
	SRR5643662	five period of Gastrodia elata	93.230
	SRR5643663	five period of Gastrodia elata	87.040
	SRR5643664	five period of Gastrodia elata	95.880
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	98.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	107.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	94.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	126.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	120.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	131.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	122.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	113.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	83.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	103.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	80.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	80.970
SRP279888	Gastro	Gastrodia elata tuber	113.32
	Juven	Juvenile tuber	136.24
	Mother_Gastro	Mother tuber of Gastrodia elata	79.59
	Mother_Juven	Mother tuber of Juvenile	101.04