Detail information of GWHGAAEX016515/evm.TU.scaffold_77.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|114321835|ref|YP_743518.1| | 3.00E-53 | regulator of chromosome condensation, RCC1 [Alkalilimnicola ehrlichii MLHE-1] |
| KOG | KOG1426 | 0 | FOG: RCC1 domain |
| nr | gi|743816579|ref|XP_010930682.1| | 0 | PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 0 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|D7SWF9|D7SWF9_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI21608.3} |
| TAIR | AT5G63860 | 0 | Regulator of chromosome condensation (RCC1) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000075 | 867909 | 983750 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016515
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00415.17 | RCC1 | 28 | 73 | 5.20E-13 |
| PF00415.17 | RCC1 | 80 | 127 | 1.50E-15 |
| PF00415.17 | RCC1 | 135 | 179 | 5.30E-15 |
| PF00415.17 | RCC1 | 182 | 230 | 1.10E-13 |
| PF00415.17 | RCC1 | 234 | 283 | 3.80E-13 |
| PF00415.17 | RCC1 | 286 | 335 | 4.50E-17 |
| PF00415.17 | RCC1 | 340 | 371 | 3.60E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 40.570 |
| SRR2545915 | Juvenile tuber | 42.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 57.500 |
| SRR5643514 | five period of Gastrodia elata | 46.560 | |
| SRR5643515 | five period of Gastrodia elata | 43.900 | |
| SRR5643524 | five period of Gastrodia elata | 49.640 | |
| SRR5643525 | five period of Gastrodia elata | 40.130 | |
| SRR5643528 | five period of Gastrodia elata | 32.800 | |
| SRR5643658 | five period of Gastrodia elata | 50.260 | |
| SRR5643659 | five period of Gastrodia elata | 37.560 | |
| SRR5643660 | five period of Gastrodia elata | 32.230 | |
| SRR5643661 | five period of Gastrodia elata | 34.200 | |
| SRR5643662 | five period of Gastrodia elata | 26.700 | |
| SRR5643663 | five period of Gastrodia elata | 41.740 | |
| SRR5643664 | five period of Gastrodia elata | 26.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 24.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.800 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.240 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.490 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 32.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 32.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.19 |
| Juven | Juvenile tuber | 47.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 42.18 | |
| Mother_Juven | Mother tuber of Juvenile | 60.38 |