Detail information of GWHGAAEX016517/evm.TU.scaffold_77.28
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|330508866|ref|YP_004385294.1| | 3.00E-10 | DNA-directed RNA polymerase [Methanosaeta concilii GP6] |
| KOG | KOG3298 | 2.00E-110 | DNA-directed RNA polymerase subunit E' |
| nr | gi|357133761|ref|XP_003568492.1| | 1.07E-121 | PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Brachypodium distachyon] |
| Swissprot | tr|P46279|RPB7_SOYBN | 2.00E-118 | DNA-directed RNA polymerase II subunit RPB7 |
| trEMBL | tr|I1HJL8|I1HJL8_BRADI | 4.00E-122 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G25940.1} |
| TAIR | AT5G59180 | 2.00E-110 | DNA-directed RNA polymerase II |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000075 | 1085384 | 1091709 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016517
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03876.16 | SHS2_Rpb7-N | 9 | 77 | 1.50E-16 |
| PF00575.22 | S1 | 78 | 156 | 1.60E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03015 | RPB7, POLR2G | RNA polymerase | map03020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003899 | Molecular Function | DNA-directed RNA polymerase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.880 |
| SRR2545915 | Juvenile tuber | 37.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.560 |
| SRR5643514 | five period of Gastrodia elata | 35.120 | |
| SRR5643515 | five period of Gastrodia elata | 37.820 | |
| SRR5643524 | five period of Gastrodia elata | 37.430 | |
| SRR5643525 | five period of Gastrodia elata | 52.460 | |
| SRR5643528 | five period of Gastrodia elata | 51.050 | |
| SRR5643658 | five period of Gastrodia elata | 50.980 | |
| SRR5643659 | five period of Gastrodia elata | 40.230 | |
| SRR5643660 | five period of Gastrodia elata | 35.410 | |
| SRR5643661 | five period of Gastrodia elata | 38.180 | |
| SRR5643662 | five period of Gastrodia elata | 41.880 | |
| SRR5643663 | five period of Gastrodia elata | 41.830 | |
| SRR5643664 | five period of Gastrodia elata | 37.910 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 34.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 35.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 38.930 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 43.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 43.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 37.53 |
| Juven | Juvenile tuber | 30.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.62 | |
| Mother_Juven | Mother tuber of Juvenile | 28.05 |