Gene detail

Detail information of GWHGAAEX016523/evm.TU.scaffold_77.37

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|435850447\|ref\|YP_007312033.1\|	8.00E-121	DNA polymerase elongation subunit (family B) [Methanomethylovorans hollandica DSM 15978]
KOG	KOG0969	0	DNA polymerase delta, catalytic subunit
nr	gi\|695008348\|ref\|XP_009390764.1\|	0	PREDICTED: DNA polymerase delta catalytic subunit [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LRE6\|DPOD1_ORYSJ	0	DNA polymerase delta catalytic subunit
trEMBL	tr\|K3ZGZ6\|K3ZGZ6_SETIT	0	DNA polymerase {ECO:0000256\|RuleBase:RU000442}
TAIR	AT5G63960	0	DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000075	1517952	1595421	-

Transcript Sequence
>GWHTAAEX016523 TGAACATGCCCTACTCAATTGGCGGGAAGAGAATTCCAACCAGCACCCACTGAAGTTTCTTTCCTTTGCTCCTCCAGTTCTGTTCCTCCGGCGAGCACAATGAGCGCAGGAAACACCAAGAGGCGTGTCTTGACAGCGGAAAGCCCTGCGAACTCTTCCAAGAGATTCCAGTCCGCATCCCCGGCACCAAGAAACAGCAACCCTAATTCTTCATCGCCGCCGAACGGAACTATCGAGATGGAGGACGACCTAATGGATGAAGACGTTTTCCTGGAAGAAACCTTACTTAGATACGAGGAGGACGAAGAGGCTCTCCGTCTTTTTCAAGACGAAGTGCTCGCCGCCCGCCTGTCGAAGTGGAAACGCTCTGCCCTTTCCTCTTCATATCTTTCATCTTCCAAAAACATTCTCTTCCAGCAGCTAGAGATTGATTATGTGATTGGAGACACCAACAAAGAGCTGCTTCCTATGTCCTGTGGCCCTGCAGCAATTCTCAGAATTTTTGGAGTGACCAAGGAAGGTCATAGTGTGTGCTGCCATGTACACGGATTTGAGCCGTATTTCTATGTAAGCTGTCCAGCTGGAATGAGCCCTGATGACATCGTAGGATTTCACCAAACCCTTGAGTCAAGGATGAAAGAATCCAACAGAAGCAGCAATGTGCTTAGGTTTGTCAAGCGGGTTGAGGTTATTCAGAAGAAGAGCATTATGTACTATCAGCAACATGAATCCCAGCCTTTTCTGAAGATCGTAGTTTCTTTGCCAACCATGGTGGCTAGTTGTCGCGGCATTCTGGAGAGAGGCATACAGATTGAAGGCCTTGGTTCAAAATGCTTTCTTACATATGAAAGCAACATTCTTTTTGCATTACGCTTCATGATTGATTGCAGCATTGTTGGAGGAAACTGGATAGAAATTCTTGCAGGGAAGTATAAGAAATCGATGGTTAATATTTCTTCTTGCCAGTTGGAATTGGATTGCCTATACTCTGATTTAATTAGTCATGCTCCGGAAGGAGAATACTCAAAAATGGCTCCATTTCGTATTTTAAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGACTCTTCCCCGAGCCAACTCATGATCCTGTTATTCAGATTGCCAACTTGGTCACTATCCAAGGTGAAGGTGAACCTTTAATACGAAATGTCATGACTTTGAAATCCTGCTCACCTATAGTTGGGGTCGATGTATTGTCTTTCGACAAAGAAAAAGATATTTTACTTGCATGGAGGGACTTCGTCCGTGAGGTAGATCCTGATATTATTATAGGCTATAACATCTGTAAATTTGATCTGCCGTACTTGATTCAGAGAGCTGAAACACTTAAGATAGCGGGATTTCCAATATTTGGCCGTGTGAGAAATAGTAGGGTTCGTGTTAGAGATGCCACTTTCTCTTCAAGACAGTATGGCGTTCGCGAAAGCAAAGACATAACTATTGAGGGGAGAGTTCAGTTTGATCTTTTTCAGGCTATACAAAGGGACTATAAACTCAGTTCTTACTCTTTAAATTCTGTTTCTGCACACTTTCTTGGCGAGCAAAAAGAGGATGTCCACCATTCAATAATATCTGACCTTCAGAATGGAAATTCAGACACAAGAAGGCGGCTTGCTGTATATTGCCTAAAGGATGCTTACCTTCCACAACGACTTTTAGACAAACTAATGTATATTTACAACTATGTGGAGATGGCACGAGTTACGGGGGTCCCCATCTCTTTTCTTTTATCCAGAGGACAGAGTATTAAGGTTCTTTCACAACTTCTCAGGAAAGCCAAACAAAAGAACCTAGTTATTCCAAACGTTAGAGGGCAGGGCTCAGGACAAGAAACTTTTGAGGGAGCAACTGTTTTGGGGGCAAAAACTGGGTTTTATGAAAAACCAATTTCTACACTAGATTTTGCTTCCTTGTATCCATCCATCATGATGGCCTACAATCTATGCTACTGCACTTTGTTGACACCAGAAAGTGCCCGCCAGATGAACTTGCCTGCAGAGAGCATTAACAAAAGTCCATCCGGTGATATTTTTGTTAAATCTGAAATGCAAAAGGGCATTCTTCCAGAAATTCTTGAAGAGTTATTGACTGCTCGTAAGAGGGCGAAGGCAGACTTGAAGGAAGCTAAAGACCCATTTGAGAAGGCTGTACTGGATGGCCGCCAGCTAGCATTGAAGATCAGTGCAAACTCTGTTTATGGATTTACTGGTGCTACTGTTGGACAATTGCCCTGCTTAGAGATATCCTCGAGTGTGACAAGCTATGGTCGACAAATGATTGAACACACAAAAAAGCTTGTGGAAGAAAAATTTACAACACTGGCCAACTATGAACATAATGCAGAGGTTATTTATGGAGATACTGATTCTGTTATGGTACTATTTGGGGTTCCTACTGTGGAAGCTGCAATGAAGTTGGGCAAAGAGGCAGCAAAATACATTAGCGGTACTTTCAGGAAGCCTATCAAGCTTGAGTTTGAGAAGGTATATTATCCATACTTACTGATAAGCAAGAAGAGGTATGCAGGATTGTACTGGTCGAATCCAGATGCATTTGACAAAATGGATACAAAAGGCATTGAGACTGTTAGAAGAGACAATTGCTTGCTAGTAAAAAATCTTGTAACGGAGTGCCTCTACAAGATATTGATTGACAGAGACGTCCCTGGAGCCGTACAATATGTCAAGAACTGTGTTTCTGATCTTTTGATGAGCCGAGTTGATCTTTCTCTTTTGGTAATTACAAAGGGGCTTACAAAAACCGGTGATGATTATGCGGTCAAAGCTGCTCACGTTGAACTTGCAGAACGCATGCGAAAACGTGACGCAGCTACAGCTCCAAATGTAGGAGATCGGGTTCCTTATGTCATTATTAAAGCCGCTAAAGGAGCCAAGGCATATGAAAGGTCAGAGGATCCAATTTATGTGCTTGAGAATAACATTCCAATTGATTCTCAGTATTATCTTGAAAACCAACTTCAGAAGCCACTTCTGAGGATATTCGAGCCTATTCTTAAGAATGCTCACCAAGAGCTTTTCAAAGGAAAGCATACCAGAAATTTAAAGAATTCAACTCCTACAAACAGCGGCATAATGAAGTTTGCAAAGAAACAGCTTAGCTGTCTTGGATGCAAAGCATTAATCAGCGATGCAGATCGAACATTATGCTCACATTGCCAAGGAAGGGAACCTGAGTTGTACTGCAAGACAGTAGCAAATGTTGCTGAAATGGAGATTCTTTTTGGGAGGCTTTGGACGCAATGCCAGGAGTGCCAGGGTTCACTTCACCAGGATGTCCTGTGTACAAGTCGGGATTGCCCAATTTTTTATCGGAGGAAGAAAGCACAGAAGGATATGGCTGAGGCTAAGATGCATTTGGATCGATGGGAATTTTGAGCATCAGCATTTTGAGCATCAGCATTTTGAGGCTAAGATGAAGTCACTTAGCCTCACCTTATACATCCTGTGCAACATGTTACTTCAGCTCCTGTGAGATTTTTGGAAAAGAATAAAATGGCACTAAAATATGCGAATGATGAACAGTTTCTTTTCCGGCAGGTTAGCCTTATATATGCTTTTCCTTATTTATTTCTGTTTTGTTGTAAAGTATCACTGGAAGGATGAGTTTAACTCAAGTGTATTGTATTTGTGGCCATTTTGAACCAATTCCTTCATAATTTTGGAAAAATATATCTTAGGATGAAATTAAATAATAGATGTTCTCTTTTTGTTTTTGTTAAAACAGTTGAGTGTGAATGTTCCCGATGTCAAACGAGGAATAAGATGAACAATAAAGACATGAGCATATACCAACTGAAGGGATCTCTTCATTTGAA

Network for GWHGAAEX016523

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03104.18	DNA_pol_B_exo1	138	481	2.20E-88
PF00136.20	DNA_pol_B	539	978	2.40E-151
PF14260.5	zf-C4pol	1015	1086	9.80E-17

Protein Sequence

>GWHPAAEX016523
MSAGNTKRRVLTAESPANSSKRFQSASPAPRNSNPNSSSPPNGTIEMEDDLMDEDVFLEETLLRYEEDEEALRLFQDEVLAARLSKWKRSALSSSYLSSSKNILFQQLEIDYVIGDTNKELLPMSCGPAAILRIFGVTKEGHSVCCHVHGFEPYFYVSCPAGMSPDDIVGFHQTLESRMKESNRSSNVLRFVKRVEVIQKKSIMYYQQHESQPFLKIVVSLPTMVASCRGILERGIQIEGLGSKCFLTYESNILFALRFMIDCSIVGGNWIEILAGKYKKSMVNISSCQLELDCLYSDLISHAPEGEYSKMAPFRILSFDIECAGRKGLFPEPTHDPVIQIANLVTIQGEGEPLIRNVMTLKSCSPIVGVDVLSFDKEKDILLAWRDFVREVDPDIIIGYNICKFDLPYLIQRAETLKIAGFPIFGRVRNSRVRVRDATFSSRQYGVRESKDITIEGRVQFDLFQAIQRDYKLSSYSLNSVSAHFLGEQKEDVHHSIISDLQNGNSDTRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVRGQGSGQETFEGATVLGAKTGFYEKPISTLDFASLYPSIMMAYNLCYCTLLTPESARQMNLPAESINKSPSGDIFVKSEMQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEEKFTTLANYEHNAEVIYGDTDSVMVLFGVPTVEAAMKLGKEAAKYISGTFRKPIKLEFEKVYYPYLLISKKRYAGLYWSNPDAFDKMDTKGIETVRRDNCLLVKNLVTECLYKILIDRDVPGAVQYVKNCVSDLLMSRVDLSLLVITKGLTKTGDDYAVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDSQYYLENQLQKPLLRIFEPILKNAHQELFKGKHTRNLKNSTPTNSGIMKFAKKQLSCLGCKALISDADRTLCSHCQGREPELYCKTVANVAEMEILFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKMHLDRWEF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02327	POLD1	DNA replication	map03030
		Base excision repair	map03410
		Nucleotide excision repair	map03420
		Mismatch repair	map03430
		Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity
GO:0000166	Molecular Function	nucleotide binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.010
SRP064423	SRR2545915	Juvenile tuber	23.730
SRP108465	SRR5643513	five period of Gastrodia elata	13.540
	SRR5643514	five period of Gastrodia elata	16.270
	SRR5643515	five period of Gastrodia elata	13.510
	SRR5643524	five period of Gastrodia elata	13.340
	SRR5643525	five period of Gastrodia elata	10.070
	SRR5643528	five period of Gastrodia elata	6.690
	SRR5643658	five period of Gastrodia elata	9.900
	SRR5643659	five period of Gastrodia elata	15.910
	SRR5643660	five period of Gastrodia elata	17.290
	SRR5643661	five period of Gastrodia elata	15.140
	SRR5643662	five period of Gastrodia elata	13.700
	SRR5643663	five period of Gastrodia elata	14.560
	SRR5643664	five period of Gastrodia elata	13.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.440
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.100
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.350
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.480
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.480
SRP279888	Gastro	Gastrodia elata tuber	18.77
	Juven	Juvenile tuber	23.44
	Mother_Gastro	Mother tuber of Gastrodia elata	12.66
	Mother_Juven	Mother tuber of Juvenile	19.25