Detail information of GWHGAAEX016529/evm.TU.scaffold_77.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|37522465|ref|NP_925842.1| | 2.00E-24 | co-chaperonin GroES [Gloeobacter violaceus PCC 7421] |
| KOG | KOG1641 | 6.00E-110 | Mitochondrial chaperonin |
| nr | gi|672138182|ref|XP_008792839.1| | 1.51E-129 | PREDICTED: 20 kDa chaperonin, chloroplastic-like [Phoenix dactylifera] |
| Swissprot | tr|O65282|CH10C_ARATH | 2.00E-110 | 20 kDa chaperonin, chloroplastic (Precursor) |
| trEMBL | tr|A0A061GL19|A0A061GL19_THECC | 2.00E-121 | Chaperonin 20 isoform 1 {ECO:0000313|EMBL:EOY30201.1} |
| TAIR | AT5G20720 | 6.00E-110 | chaperonin 20 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000075 | 1689160 | 1697166 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016529
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00166.20 | Cpn10 | 66 | 157 | 1.70E-27 |
| PF00166.20 | Cpn10 | 166 | 257 | 3.30E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:1901671 | Biological Process | positive regulation of superoxide dismutase activity |
| GO:0006457 | Biological Process | protein folding |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0046914 | Molecular Function | transition metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 129.460 |
| SRR2545915 | Juvenile tuber | 213.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 108.600 |
| SRR5643514 | five period of Gastrodia elata | 109.650 | |
| SRR5643515 | five period of Gastrodia elata | 126.560 | |
| SRR5643524 | five period of Gastrodia elata | 99.350 | |
| SRR5643525 | five period of Gastrodia elata | 47.620 | |
| SRR5643528 | five period of Gastrodia elata | 56.090 | |
| SRR5643658 | five period of Gastrodia elata | 35.860 | |
| SRR5643659 | five period of Gastrodia elata | 116.920 | |
| SRR5643660 | five period of Gastrodia elata | 121.580 | |
| SRR5643661 | five period of Gastrodia elata | 112.600 | |
| SRR5643662 | five period of Gastrodia elata | 157.680 | |
| SRR5643663 | five period of Gastrodia elata | 171.990 | |
| SRR5643664 | five period of Gastrodia elata | 144.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 123.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 102.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 138.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 107.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 95.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 67.920 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 99.300 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 131.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 173.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 109.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 117.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 117.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 159.02 |
| Juven | Juvenile tuber | 89.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.36 | |
| Mother_Juven | Mother tuber of Juvenile | 46.79 |