Gene detail

Detail information of GWHGAAEX016531/evm.TU.scaffold_77.47

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743840576\|ref\|XP_010937300.1\|	0	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Elaeis guineensis]
Swissprot	tr\|Q689D6\|RPD1_ARATH	1.00E-35	Protein ROOT PRIMORDIUM DEFECTIVE 1
trEMBL	tr\|M0RJ19\|M0RJ19_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P17440_001}
TAIR	AT1G79120	2.00E-45	Ubiquitin carboxyl-terminal hydrolase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000075	1748776	1771283	-

Transcript Sequence
>GWHTAAEX016531 CGCACACTCCGTCATTTTCCTCCGGCGATCTCGCGGAAAGCAACAAGGCGTCGTCGATCCCGTGGAGGCGCTGCAAAGGGCGTCGTTCCATTCGACGGAGGCGCTGCAAAGGGTCGTCGACGCATTCCAAGCCATCGTTATTCGACCCATTCGTCGATCTCGCCGAAATCTTTGAATGCACGCCGTCGTTGTCGATATTTCACTAGCATTTCTCTCGTCCCACTGTTCGGGTTTCGCAGCACATCGAAACATTTGGCGGGAATTAACATTTGTCGTTGTCTTTGTTTTGCTGCGAATAAGGGCGGCAGAGGATCATTGACAGTATCGCAGCATTTGGATTTCTAGGGTTCTCCAAGAAAAACAGTGGACGACGAGCCGCATCGTTCTTCTTCTTTCTGAGGTGCCGCAAGCCGCATTGTCCTAAGAGCTGCCAGTAAATTTCTCTCCTGATGGTGATCAGATTTTTTCTTACTGCTGCAAACAAAAGGAATGTAATCACTCAGGGCCTTCCAATTTCATTTGCTAGTGAGATAACTAAAGTTGTTGGTTCAACATTAGGATGCTATTACAACACCTTGCAGAAGCGATTGCTGAGTAAAAGCAGGAGGGTGCAGGACAGAAGCAAGCATAAAAGGGTTCATGATCTTGAAATTGTTACAGAAAGGTGGAAGGTAGTGTCAAAGATTTTGTTTCTTATAGATGTTTTGAAGAAAGAGCCAGAGCAGGTCATTCCTTTAAAGAATTTGGAGCAATATCGGCAACAAATAAATCTCATCAAACCTCACAAAGTTGCAGACTTTGTTCAAAAATCCCCAAGACTTTTTGACCTATATAAGGACCAGAAAGGAGTTGTGTGGTGTGGCTTTACAAGGAAGGCAGAGAGCCTTGTTGAAGAAGAGGGACGGCTTATTGAAGAGTACACAGAGACGGCAGTGGAGCATGTTACACGACTCCTGATGATGTCTGTGGAAAAAAGGCTTCCATTAGATAAGATTGTTAATTTTAGAAGAGACTTTGGCCTTCCATTAAATTTTAGAAAAGGATGGATCCATAGCTTCCCTGAGCATTTCAGAGTTGTGAAAATTGATGGTTCAGATTATCTAGAACTGAATTCCTGGAATCCAGGTTGGGCAATTACTGAGGTTGAAAAGAAAGCTAGGCCAGAAAATATGGCTTTGCTTCCATCACCTGGAATTCTCTGCCTTCCATTCCCAATGAAATTTCCTTCGAATTATAGGAAAAAGTATATGGATTATGGTAAAATTGAGCATTTTCAAAATAGATGTTACCTATCTCCATATGCTGATGCTAAGGGCCTTATTCCTGGATCCCAGGAATTTAACAAAAGAGCAGTCGCAATGATGCATGAGATACTGAGCTTCACTATTGAGAAAAGGCTTGTAACTGATCACCTCACACATTTCCGACAAGAATTTATGATGCCCCAAAAATTGATGAGACTTCTACTGAAGCACTATGGGATCTTTTATGTTTCCGAAAGGGGGAAGAGGTTCAGTGTTTTTTTGACCGAAGCATATGAAGGAGCAAACTTGCTGAGTAAATGTCCTCTCGTTCTTTGGAAAGAGACCATTTTAAAACTGACTGGCTACAGAGGACATAAAACCAGAGTAAAAAAATTTGATGAATTTTCCGATATCGATGAAGGCGATTTGTTTGATGGCGAGCTTGATAACCCGGGTGTGTTTCATAATTTTGAAGATGAAGAAAGCACGGGTGTCCTCAAAGACCCTATCCTTGCTGAAGACTCGGAGATGGATGTCAGAGATTTGTTTGATGATGCATGAGGTGATCCCCATTCTATTTTTGCTGTCTGGTCTAGTACATTGCCATTCTATTGAAGCTTTTTTCTGTTAGTACATGCTCATTTTATGAAATTAAATTGATGTTTACTGTGAGTCTTCTTGTTAGCTTTATTAAACTAGCAACCAAAGTTTTGTTATCACTGATGTAATGTCATATATAGGAGGCTCCTCAATCTAGGTTATGTATATTCATTAAAAGAAATATTGAAGTTTAAATCTTTCAATGGGGTGTACACATAGGCTTACAACACTTGTTTTTTGTTTTATTAGTGTAATGATTGTTAAACTTAATTTGCATTGTTATATTTTGATGAATAGGATTCTTTGCAATAGTGATGGACAGGTGATTATCATAACTATAACTAACTACGATAAGACCTCCTCGTGAGATTAAATTACAAAATAATCTCTTGAAGAATTTGTGCCAGTCACATACTTAATGTGACAACTTTTTATTTATTTTTTGCATTGCTTTTGGCATACATAGGGGTTTGTTATTGCACCATATAATAGTGTAACTGTACAAGCGCCTTAAAATGTTTCTATTTTATGCTTTAATGGTTTTTTAATTGATGATGTATTTCTTGGATTCTCTTTTTGATATTTGGGCCAAATCATTACTTGATTATGA

Network for GWHGAAEX016531

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11955.7	PORR	61	388	1.30E-108

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.490
SRP064423	SRR2545915	Juvenile tuber	10.140
SRP108465	SRR5643513	five period of Gastrodia elata	9.790
	SRR5643514	five period of Gastrodia elata	9.080
	SRR5643515	five period of Gastrodia elata	7.810
	SRR5643524	five period of Gastrodia elata	10.120
	SRR5643525	five period of Gastrodia elata	7.390
	SRR5643528	five period of Gastrodia elata	8.790
	SRR5643658	five period of Gastrodia elata	9.000
	SRR5643659	five period of Gastrodia elata	6.680
	SRR5643660	five period of Gastrodia elata	5.620
	SRR5643661	five period of Gastrodia elata	8.830
	SRR5643662	five period of Gastrodia elata	4.880
	SRR5643663	five period of Gastrodia elata	5.140
	SRR5643664	five period of Gastrodia elata	5.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.810
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.490
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.710
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.960
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.960
SRP279888	Gastro	Gastrodia elata tuber	6.25
	Juven	Juvenile tuber	13.57
	Mother_Gastro	Mother tuber of Gastrodia elata	9.21
	Mother_Juven	Mother tuber of Juvenile	9.05