Gene detail

Detail information of GWHGAAEX016532/evm.TU.scaffold_77.49

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|307152085\|ref\|YP_003887469.1\|	6.00E-15	hypothetical protein Cyan7822_2215 [Cyanothece sp. PCC 7822]
KOG	KOG1124	0	FOG: TPR repeat
nr	gi\|672150894\|ref\|XP_008797373.1\|	0	PREDICTED: LOW QUALITY PROTEIN: protein TONSOKU [Phoenix dactylifera]
Swissprot	tr\|Q6Q4D0\|TONS_ARATH	0	Protein TONSOKU
trEMBL	tr\|M0T0T2\|M0T0T2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P22570_001}
TAIR	AT3G18730_1	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000075	1836615	1894502	+

Transcript Sequence
>GWHTAAEX016532 GCAGTATGGCAAGCGGCTCTGCGAAACTCTTCCTCGAAAACATAATGGCGGGAAACTTTCATTGCTGAACTGCACCCTCTCACGAAGCCCCATCTTCCTCAGGAAACCTCGATGGCAGAAACAAAACAAAAATCGACTGTTCTCCCATCGCTCTGAAAAGAAATGGGAAGAGAAGATGAGGAGATCAAAGCAGCGAAGCTCGGATACAAAGAGGCGGTTAGGGATGGTAACCACGAAGAAGAAGCACGGTGGGCGAACGTGATTGGCGACCTCCTCAAGAGGAGGGGAGAATACGTCGAGGCTTTGAGGTGGCTTCGCATTGATTACGAAATTTCAGCGAAGTATCTTCCCCAGAAACAGCTTCTCGCAACATGTCAGTCACTTGGCGAGGTCTATCTCAGACTCGAGCGCTTTAAAGAAGCGCTCCTCTACCAGAAAAAGCATCTGGAGCTTACCAATGATTCAAATGACCTTATTGAACAACAGAGAGCAAGCACTCAACTAGGCCGAACTTACCATGAAATTTTTTTAAGATCTGAAAGCGATCACAATGCCATTAGAAATGCCAAGAAATACTTCAAGTTGGCTATGAAACTTGCACGGTCTCTCAAGGAAAACCCTTCCTCTAAAACAGATTGTTTTTTTCTGAAAGAATACATTGATGCACACAACAATATAGGCATGCTTGAAATGGATCTGGATAATTTGGAGGAAGCCAAGAAAATGCTTTTGGAAGGCTTAAAGATATGTGATGAAGAGGAAGTCAATGAAGATGATGATGGACGCAGCAGGCTTCATCATAATCTTGGAAGTGTTTATTTGGAACTGCGGGAGTGGAGCAAGGCAAGGGACCACATAGAGAGAGACATTTTAATCTGTAAACAGATTGGACATGCCCAAGGTGAAGCAAAGGGGTTCATCAACCTTGGTGAGCTGCATTATCGAGTACAAAAATATGATGAGACTATTCTTTGCTATCAAAAAGCAATTGATATCGCAAAAAGCATGGAGGACGAAGATTCATTGGTAGATCAGATTTCTCAAAATATTAAAACTGTAAATGAAGCATCCAAAGTGCTCGAGTCATTAAAGAAAGATGAGCAAAAACTTAAAAGGTTGATGAGGGCTTCAATTGATGCTCGTGGAACAGCAAATGAAAGAAAGTGCTTGCTTGAGCAAAATGTTTGTTTAGATAGTCTGATTGAAAAATGCAGCATGATTTTTGCATGGCCAAAGCATCAAGAATTTGCTAAACGGAAGAAAAGAGTAGCAGTTGAGCTTTGTGATAAGGAAAAACTCAGTGATTCTTTTCTGGTCATAGGAGAGTCCTACCAGAAACTCAGAAACTTCAGGAAAGCACGCAAATGGTATATGAAAAGTTGGAATATCTATAGGTCTATTAATAATCATGAGGGGCAAGCATTAGCCAAGATTAATGTGGGAGAGGTTTTGGATTCTTCTGGTGACTGGGCTGGAGCATTAGAAGCATTTGAGGAGGGTTATAGAATATCGGTCAAAGGAAACCTTCTATCGGTTCAATTATCTGCACTTGACAATATGCATTATAGCCATATGATTAGATTTGATAATGTTGAAGAAGCCAGGAAACTGCAGATTGAAATTCAAAATGTGAAGCGGCTTTTGAATGGAGGTGATTTATTAGCAAGAGCAGATCAGGATTACTGTTCGGAAACTGAAACTGAGGGCGTAGTTGCATCTGATGCTATACCAGGTGAATGTGATCCCTCGGAAATTAGTACTTCAATTTTTGAGGAGCCAAATATTGTCTCTGGTGCTGATCTTGATGATGATGTTCCTTTGAGAATGCTGGTTCAAAAAAGTAAAAAATTGTCCAAGATGGAAACACCTTTATTAAACACAAAAGTCAAATCAGAGAATAGTTTGGGTGTGGTTTCAGCTGAAGATTTAAACAACTATCATGATATCCTCCAGTCTTTTGGTCGCAAGCGTGCTCGTGTGGTAATTTCTGATGGGGAAGATGAATCTGAGCAGGTGCAACAATTTAGAAAAAGTAACAATGGGATTCTTATTGAGGATGTGGCCACTTCATGTGGAGATATCAAGCCGGATGAAATAGCTAGTCTTAGTGAAGGGCAGGAATTGGTGCATAGTAATGCGCCAAAAGATAAATTATGCTCATCTACACCAATTCAGATTGAAGAGAGTACGAGCTCTTTCAAATCAAAATGCTCGAAATCAATTACCGATAATGTCACAGAATTTGAATCTGCTAGCAATGTATCTAACTTTACCAATTGTGGATCAAAACTTCATGCTTGTCAAGTTCCTGGTCCTTGTCTGGATATCACCAGTGGTGCAGATTTTACTTCTTCAGAACATAATCATGGTTGGCCCATCATGTTTAAAGTTGGTCATGACTCAGTGTATGTGGATATGAATTGTTGCTTGACGGGTAACATATTAGATGTTCATTATCTAAAAATTGAAGTGGCTTGTGCATTCTACATCGGGCCTTTTGAAAACAAAAGATCTAAAGGTTTAGTTCCTGTGATTCATCAGCTGACCTGCTGTGGGAAAATACTACGCTCGCAGGAGACTATTGAAGATATGAAAAATCTTCTTTCTCAAAATCGTTGCATTGAAGTAATTATCAATGAATGGGTGCCAAAACGACTTATGAAGCTGTATACAAGTATCTGTGATAAGTCGCCTGAAGTGCCTAATAATAAGTTGCTAAAAAAGTTGTACAGTTTGGAGGTTTCAGAGGATGAAGTCATTGCATCAGATTGCGCCTTACAAGATATATCAGCATTGTCATTCTTACAGGCACTTGAGGTTCACAAAACAGTTGCACTGTTGGACATTTCTCATAATTCCTTAGGGAATGAGACAATGGAGAAAATTCAGCAAATATTCACCTCATCAAACCAAAAATATGGCGGTTTAACCCTGGATTTGCATTGCAATCGGTTTGGTCCAACTTCCTTATTCCAGATATGTGAATGTCCGGTCATGTTCAAACGCCTTGAAACATTGGATCTATCTCAGAACCGTCTCACTGATGGTTGCAGCTTATACCTTTCTACAATCCTAGAAAATTGCAAAGCACTCTACAGCCTAAAAATAGAACAATGCTCCCTAACATCTAGAACAATTCAGAAGCTTGCGGACTGTTTACATGATGATTCGATCCTTTCACATCTGTCCATAGGAAAGAATAACCCCATATCTGGACATGTAATGGTGAATCTGTTATCAAAACTTTTATCTTTGGAACGTTTTTCAGAACTGAGTTTGACTGATATAAAGTTAAACAAGCCCGTGGTAGAAGGCCTTTGCCAACTTGCTAAATCGTCTACTCTTTCTGCATTGTTTCTTGGAGGGACTTGTATAGGAGCTGATGGGGCAATGAGGTTAACTGAAGCATTAAGCTCTGGGCCACAAGAGTTTGTGAAACTCGATCTGTCCACTTGTGGTATCACCTCTGATGTTATTGGCAAAATTTGTGCAAAGATAGTTCTGATTGATGGCATTGTAGAGCTGAATCTTAGAGGAAATTCCATTGGTGATGAGGGCTGCTATGCAGTGGAGTGCATGCTTTCCAATCCACAATGCAGTGTCAAATCTCTTATTTTAGATAGATGCAATCTCGGGCTTGGTGGAATACTTCGAATTGTGGTTGCTTTATCAGGAAATGAATCTTTGGAAGAGCTCCGTCTCGCTGGAAATGCCGATGTTGCCGGCGAGGCAGATGATGCGTCACATACAGCTCGCAAAAGGAGCACCGAAAGAATCGCGGAGCTCCAAGTCGCTGACAGCGAAGATGAGGGGGCGGCTTCAATTGCTGGATCTGGACGGCTGATACAGGAGCTCTCTGCTGGGATCGGCACAACAAAGCGGCTTCAGTTGTTGGATCTAAGCAGCAATGGTCTCTCCGCCCAAGCGATCGAGAGCTTGCGCTCATCCTGGGCTTTCGCCAGATCCAAAAACGGCCAAATGGCCTACGAGCATGTTGACGATGACGGTCTAACCTTGCATTTCTCTGTGCTGGGAAGGAGGTGCTGCGGCGTTCGAAGCTGCTGTAGGAAAGATAGATGACTTCTCAGTTGGCGGGATGGGCCTTTTATAGCAGTTGCTAAAAAGTAATATATTTATTTATTTAAAGTACCGTTTTTTCTGCTGTTTGCTTAGTTTGTAATTAAAGCTGCAGTCTTTGCAAAAAAATTAGAAATGCATTTCATTTTATTAGTTTTCTTTTTTTATTAAATGGTTATTATATTAGAGCTAAATAGTTGTTTGGGATTGAATATGTTCTATTAAAATATAGTATTCTCTTAGGATGCATCATTGTCCATCAAT

Network for GWHGAAEX016532

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13424.5	TPR_12	167	234	2.10E-07
PF13424.5	TPR_12	386	449	3.20E-08
PF13516.5	LRR_6	1120	1135	0.072

Protein Sequence

>GWHPAAEX016532
MGREDEEIKAAKLGYKEAVRDGNHEEEARWANVIGDLLKRRGEYVEALRWLRIDYEISAKYLPQKQLLATCQSLGEVYLRLERFKEALLYQKKHLELTNDSNDLIEQQRASTQLGRTYHEIFLRSESDHNAIRNAKKYFKLAMKLARSLKENPSSKTDCFFLKEYIDAHNNIGMLEMDLDNLEEAKKMLLEGLKICDEEEVNEDDDGRSRLHHNLGSVYLELREWSKARDHIERDILICKQIGHAQGEAKGFINLGELHYRVQKYDETILCYQKAIDIAKSMEDEDSLVDQISQNIKTVNEASKVLESLKKDEQKLKRLMRASIDARGTANERKCLLEQNVCLDSLIEKCSMIFAWPKHQEFAKRKKRVAVELCDKEKLSDSFLVIGESYQKLRNFRKARKWYMKSWNIYRSINNHEGQALAKINVGEVLDSSGDWAGALEAFEEGYRISVKGNLLSVQLSALDNMHYSHMIRFDNVEEARKLQIEIQNVKRLLNGGDLLARADQDYCSETETEGVVASDAIPGECDPSEISTSIFEEPNIVSGADLDDDVPLRMLVQKSKKLSKMETPLLNTKVKSENSLGVVSAEDLNNYHDILQSFGRKRARVVISDGEDESEQVQQFRKSNNGILIEDVATSCGDIKPDEIASLSEGQELVHSNAPKDKLCSSTPIQIEESTSSFKSKCSKSITDNVTEFESASNVSNFTNCGSKLHACQVPGPCLDITSGADFTSSEHNHGWPIMFKVGHDSVYVDMNCCLTGNILDVHYLKIEVACAFYIGPFENKRSKGLVPVIHQLTCCGKILRSQETIEDMKNLLSQNRCIEVIINEWVPKRLMKLYTSICDKSPEVPNNKLLKKLYSLEVSEDEVIASDCALQDISALSFLQALEVHKTVALLDISHNSLGNETMEKIQQIFTSSNQKYGGLTLDLHCNRFGPTSLFQICECPVMFKRLETLDLSQNRLTDGCSLYLSTILENCKALYSLKIEQCSLTSRTIQKLADCLHDDSILSHLSIGKNNPISGHVMVNLLSKLLSLERFSELSLTDIKLNKPVVEGLCQLAKSSTLSALFLGGTCIGADGAMRLTEALSSGPQEFVKLDLSTCGITSDVIGKICAKIVLIDGIVELNLRGNSIGDEGCYAVECMLSNPQCSVKSLILDRCNLGLGGILRIVVALSGNESLEELRLAGNADVAGEADDASHTARKRSTERIAELQVADSEDEGAASIAGSGRLIQELSAGIGTTKRLQLLDLSSNGLSAQAIESLRSSWAFARSKNGQMAYEHVDDDGLTLHFSVLGRRCCGVRSCCRKDR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.330
SRP064423	SRR2545915	Juvenile tuber	9.080
SRP108465	SRR5643513	five period of Gastrodia elata	6.900
	SRR5643514	five period of Gastrodia elata	9.720
	SRR5643515	five period of Gastrodia elata	6.740
	SRR5643524	five period of Gastrodia elata	7.670
	SRR5643525	five period of Gastrodia elata	1.930
	SRR5643528	five period of Gastrodia elata	1.470
	SRR5643658	five period of Gastrodia elata	2.160
	SRR5643659	five period of Gastrodia elata	3.150
	SRR5643660	five period of Gastrodia elata	3.950
	SRR5643661	five period of Gastrodia elata	3.400
	SRR5643662	five period of Gastrodia elata	2.050
	SRR5643663	five period of Gastrodia elata	1.760
	SRR5643664	five period of Gastrodia elata	1.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.330
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.150
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.880
SRP279888	Gastro	Gastrodia elata tuber	2.25
	Juven	Juvenile tuber	6.92
	Mother_Gastro	Mother tuber of Gastrodia elata	5.54
	Mother_Juven	Mother tuber of Juvenile	8.80