Detail information of GWHGAAEX016533/evm.TU.scaffold_77.50


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|20093823|ref|NP_613670.1|2.00E-67proteasome subunit alpha [Methanopyrus kandleri AV19]
KOGKOG01762.00E-16620S proteasome, regulatory subunit alpha type PSMA5/PUP2
nrgi|747053084|ref|XP_011072688.1|2.56E-169PREDICTED: proteasome subunit alpha type-5-like [Sesamum indicum]
Swissprottr|Q9M4T8|PSA5_SOYBN2.00E-168Proteasome subunit alpha type-5
trEMBLtr|W1NLE3|W1NLE3_AMBTC4.00E-168Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}
TAIRAT3G142902.00E-16620S proteasome alpha subunit E2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007518968571941019-
Transcript Sequence

Network for GWHGAAEX016533

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10584.8Proteasome_A_N8301.30E-13
PF00227.25Proteasome312184.30E-62
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02729PSMA5 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051603Biological Processproteolysis involved in cellular protein catabolic process
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0004298Molecular Functionthreonine-type endopeptidase activity
GO:0004175Molecular Functionendopeptidase activity
GO:0005839Cellular Componentproteasome core complex
GO:0019773Cellular Componentproteasome core complex, alpha-subunit complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms81.690
SRR2545915Juvenile tuber103.050
SRP108465SRR5643513five period of Gastrodia elata117.750
SRR5643514five period of Gastrodia elata188.880
SRR5643515five period of Gastrodia elata136.620
SRR5643524five period of Gastrodia elata179.380
SRR5643525five period of Gastrodia elata137.600
SRR5643528five period of Gastrodia elata184.620
SRR5643658five period of Gastrodia elata148.690
SRR5643659five period of Gastrodia elata88.470
SRR5643660five period of Gastrodia elata80.560
SRR5643661five period of Gastrodia elata90.290
SRR5643662five period of Gastrodia elata87.490
SRR5643663five period of Gastrodia elata90.720
SRR5643664five period of Gastrodia elata85.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1115.600
SRR6049655Rhizomagastrodiae_C368-T10_good_1157.870
SRR6049656Rhizomagastrodiae_C368-T07_good_1134.380
SRR6049657Rhizomagastrodiae_C368-T07_good_191.990
SRR6049658Rhizomagastrodiae_C368-T04_good_191.220
SRR6049659Rhizomagastrodiae_C368-T04_good_187.150
SRR6049660Rhizomagastrodiae_C368-T01_good_190.170
SRR6049661Rhizomagastrodiae_C368-T04_good_197.460
SRR6049662Rhizomagastrodiae_C368-T01_good_1166.020
SRR6049663Rhizomagastrodiae_C368-T01_good_1129.190
SRR6049664Rhizomagastrodiae_C368-T10_good_1205.320
SRR6049665Rhizomagastrodiae_C368-T10_good_1205.320
SRP279888GastroGastrodia elata tuber 119.07
JuvenJuvenile tuber107.18
Mother_GastroMother tuber of Gastrodia elata 124.23
Mother_JuvenMother tuber of Juvenile 116.66