Gene detail

Detail information of GWHGAAEX016534/evm.TU.scaffold_77.51

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743774064\|ref\|XP_010917385.1\|	9.99E-142	PREDICTED: transcription factor bHLH78-like [Elaeis guineensis]
Swissprot	tr\|Q9LSQ3\|BH082_ARATH	2.00E-59	Transcription factor bHLH82
trEMBL	tr\|M0SDC9\|M0SDC9_MUSAM	4.00E-115	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P10120_001}
TAIR	AT5G58010	8.00E-59	LJRHL1-like 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000075	2023493	2050307	+

Transcript Sequence
>GWHTAAEX016534 AAAACCAAACCTTTTAAGCTCTATCGGTTCGAGTTCGGGTAAAAGTGCACGATCGCTCACCTGAATCCGGTAACGCAACCGCTTAGCCAGATAGACTTTGGTTCAGTGAATCGAATAAGAAAACATTCACCAAACCTCAACCCATGCACAGCGAATCGAGAGCGAGAGGGAGCAGAAAGCGGGCTCGAAACGCACGAAGTGCTTCTAGGGCTTGCGATCGCTAATTCGAATGAAATCGGAGCTCGACGAGAACGGCTGGTAGGCTGGCCGTCTTTATTCCTGCCTTGGTTGAGTAAATCGAGTTCGAGAGTTGGTTTAAAAGCTCGGTGCGATGGTGAAGTTTTCTAAAAGGGATTAGAACATAGAATGCGCAATGATATTTCAGAATCTTGTCAATAGAGGATCTTCTTTACTCCATTCTGGCTAACCCATCTTGCGTAGGATGATTGCTGCAAGTTTCAGTGGATTTGCTCATTTCCAGAGCGGACTTTATAAGAGAAGTGACTGGAGTTGCAGAATCATGTTTTCAGTTTAGCAAATCCATACTTGGAATCTTCTTTAGCTGGTATGCAAGAAACAATGGATAACTTTCTTAACTCACTTCTGTCTGTATCATGGTCGGATATGAATGAGTCTTCAGACCGATCATGGGTAGGAAGTATTTCCTCACAACCAAATAGTCTGCTTGCTGGATCTGTGGAGACATTTCAAGTTGATGAAAAAAGTTCAATTATGCCAATGGTGCCGTCAGGTCACATAACGGGGAATGAGACTACAGAAGATTTGGCTATAGCTCATGAAAACTCATCTATTTTTTCTGATGGAAATTTGAAGTATGATGTTGGCAAAAGGCTTTTTCTGTCAGGAAATCTTTCACAAACAAACCACAATTCACAACCATCCTGTGGCATTGAGACTAGTGAAGGGGTTTTTTCAATACCTGATAGAGTTACATGTAACTCATCAGGAATACTTTATGATCTGGAATTAAATTCCTCACTACCCCACAGTGCACTGACCATTTCCAGCTCACTAGAGAGCAACGGTAGTGAACCACCCACAATTGCACAATCCATTGGAGAAGCACACTCTGTTTCTTCGGTTCCAACTATCTGGCCATCATTATATTCAGGCATATCTTCTTTATGCGGGCAGGAAAAAGCAGAAAACCTTGTCTTTCAAGGCACTACAAAGTGTTCTGATTTACTGAGGAAAAATCAAAATGAACTTGGTTCCAATTTGGTTACTTTTCTAAGTGGGCAGCAAATGAAAATGGCTGGTGCAAATTCACCACCTCAAAATCAGGGCACAGCTGAGGTTACTAACCATCAATTACCTTCTTTTTCTGGGGGATCACAAATGCTGTTCTGTAGAACAGCCGGGATGCATACAAATCTGCAGTCTGAAGAAATGACACTGAAGCATCAGTTGGGCTTTTCTTCTAACTGTCCTGAACAAATAACCCAAACCAATTCCAGTAATTGTAATGTAGTTTCCAAGCCACGAATGCGTGCACGCCGTGGTCAGGCTACCGACCCTCATAGCATAGCTGAAAGGCTTAGAAGAGAGAAAATTGCAGAAAGAATGAAAAATCTGCAGGAACTTGTGCCAAACTCTAACAAGACTGACAAGGCATCGATGCTGGATGAAATTATAGACTACGTGAAATTTCTTCAGCTGCAAGTCAAGGTCTTAAGCATGAGTCGGCTTGGTGCAGCTGGTGCAGTCGTACCTCTGATCACAGACGGCCAGGCAGAGGCTACAGGGAGCCTGCATCTATCACCAATGAGCCATGAAGGAGAAGATGCATTCTTTGACTCGCATGGGGACAATCTAGGCTTTGAGCAGGAGGTGGTAAAATTAATGGAGTCAAGTGTGACCACAGCCATGCAGTACCTACAGAGTAAAGGCCTCTGCCTGATGCCAATAGCCCTTGCAGCTGCCATCTCCAACCAGAAGTGCTCTACCGCTGCTATCCCGCCGCTGGATACAAGAAAAAAAGATTCAAGCGTACAAAATAACTATGCCAACGGAGCGGTTAATGACCTCAGCAGCGCAAGTGTCAAGCAGGAGGCGGCCAGCAAGTCATTGGGGTAACATAATGGGGGAATAATGATACATACTGATGAGACTAATGTTGAGTCAACACATGTAGATATTTTACCAGATAATATAGCTCTATTGAAAGTGCTTAACATATAAAAGTGGAGAGAATGATTTCAGATGAATTTATTGCACCAAGTGAGGGGGTGCCTTTCCTGGCCCCTTTTTATCATTGTAATTTACTTTATTTGAAATTTAATTTGTGATGCATCATCATACATAGGTCTTTTTATGTATGTGCTTCATTCAAAAAAAGACCAATGCTATTTATTAAGAGTTATTGAAGAGAATGCATGGCATGTTGTAATTTCACATTAAAATTTATAAAATCAAGTGGCTAGTTTTCTGAAGATTAG

Network for GWHGAAEX016534

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.25	HLH	325	370	5.80E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	Molecular Function	protein dimerization activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.000
SRP064423	SRR2545915	Juvenile tuber	55.850
SRP108465	SRR5643513	five period of Gastrodia elata	34.180
	SRR5643514	five period of Gastrodia elata	29.830
	SRR5643515	five period of Gastrodia elata	32.430
	SRR5643524	five period of Gastrodia elata	31.180
	SRR5643525	five period of Gastrodia elata	46.270
	SRR5643528	five period of Gastrodia elata	44.430
	SRR5643658	five period of Gastrodia elata	52.700
	SRR5643659	five period of Gastrodia elata	31.120
	SRR5643660	five period of Gastrodia elata	31.920
	SRR5643661	five period of Gastrodia elata	29.530
	SRR5643662	five period of Gastrodia elata	28.740
	SRR5643663	five period of Gastrodia elata	30.960
	SRR5643664	five period of Gastrodia elata	33.520
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	33.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.880
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	44.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	38.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.440
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	32.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	32.320
SRP279888	Gastro	Gastrodia elata tuber	52.13
	Juven	Juvenile tuber	54.07
	Mother_Gastro	Mother tuber of Gastrodia elata	61.26
	Mother_Juven	Mother tuber of Juvenile	48.33