Detail information of GWHGAAEX016539/evm.TU.scaffold_77.59
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|390944042|ref|YP_006407803.1| | 7.00E-48 | pectin methylesterase [Belliella baltica DSM 15883] |
| nr | gi|695058431|ref|XP_009417531.1| | 0 | PREDICTED: probable pectinesterase/pectinesterase inhibitor 16 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LYT5|PME35_ARATH | 2.00E-160 | Pectinesterase 35 (Precursor) |
| trEMBL | tr|M0TT29|M0TT29_MUSAM | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT3G59010 | 6.00E-160 | pectin methylesterase 61 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000075 | 2367758 | 2370471 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016539
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.14 | PMEI | 58 | 172 | 1.40E-12 |
| PF01095.18 | Pectinesterase | 211 | 505 | 3.90E-128 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0030599 | Molecular Function | pectinesterase activity |
| GO:0004857 | Molecular Function | enzyme inhibitor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.370 |
| SRR2545915 | Juvenile tuber | 26.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 68.310 |
| SRR5643514 | five period of Gastrodia elata | 57.910 | |
| SRR5643515 | five period of Gastrodia elata | 48.110 | |
| SRR5643524 | five period of Gastrodia elata | 60.040 | |
| SRR5643525 | five period of Gastrodia elata | 9.540 | |
| SRR5643528 | five period of Gastrodia elata | 1.810 | |
| SRR5643658 | five period of Gastrodia elata | 1.770 | |
| SRR5643659 | five period of Gastrodia elata | 40.700 | |
| SRR5643660 | five period of Gastrodia elata | 31.380 | |
| SRR5643661 | five period of Gastrodia elata | 46.960 | |
| SRR5643662 | five period of Gastrodia elata | 30.820 | |
| SRR5643663 | five period of Gastrodia elata | 24.420 | |
| SRR5643664 | five period of Gastrodia elata | 45.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 64.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 65.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 110.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 60.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 58.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 60.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 43.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 83.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 58.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 127.770 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 127.770 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.19 |
| Juven | Juvenile tuber | 28.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.51 | |
| Mother_Juven | Mother tuber of Juvenile | 32.28 |