Gene detail

Detail information of GWHGAAEX016540/evm.TU.scaffold_77.60

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743774060\|ref\|XP_010917383.1\|	PREDICTED: AT-rich interactive domain-containing protein 4-like [Elaeis guineensis]
Swissprot	tr\|Q6NQ79\|ARID4_ARATH	AT-rich interactive domain-containing protein 4
trEMBL	tr\|M0SC47\|M0SC47_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P05790_001}
TAIR	AT3G43240	ARID/BRIGHT DNA-binding domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000075	2444743	2461841	+

Transcript Sequence
>GWHTAAEX016540 GAGAGAGGGAGAGAGAGAGAGAGAGCAAGGAAATCGGGCTTCGTGTAATAAGGCTAGTCGCAGCTGCAGCAACCACAATGAATAGGATCTGCAAAGGCAAGCTGGAAGAAAAGGATTTGCCAAAAAAAAGAAAAAAATCCAAACCTCCGAATCAAAAGTTCAAAAGAGGCGTAACCCAGTATTTTTTTGATGTCTGGATAATTTGAACGTTTCCCGCAATACGATTTTTGGATTGAAATGTTGTCGGATGCCTTGCTGATCCCAGCGCTACGAATCCTGTGGTCTTCCGTCTCCATTTGATTTTTTTAATGCTTTTCGGAGTTCCGGATTCTTTAATTGTGGTTTTCATTTTTGTATCTTTGGTTTGGTCTTTATTTCCAGTTTCGTCAATCGAGATTTTTTTTCATTTTATTTTTTGATTTGTTTTATAATTCTAATCATTTGCCCTTTTGTGTGGTTATATTTTGACTACGCGTGTGAGCCGAGGAAGCCTGATGGGTTTAATTGATATAGTAGTTGTCTGCCCTTTTAATGTGTTGGTTTTTATCTTTATTTTTTTGCCAAGTTTTTGTTAAAATCATCTTAAAGAGAAATCCGTCGACGCTAGGGTTTGTTTCCGCTGTTTTTCTGTTTTACTCTTTTCCATTCTCTTATCCGGGCTTGTGGTTTCCGTGTACTTGGAGTCCCTGAGACCTTGTTCGTGAATTTTCTCACCCTTGTTTGGCCGGCCCCAAGCGTTGATTCATCGCCGATTCGTCATCTTGTTGATGGTGGTCGTTATGAAAAATTAGCTGATTTTGTACTTTGATACCCAAGGGGATGAGCTAGCACTCTGTACTTCCCTCATAATGTCTCATTTGGAAGGTTTCGTGAAGCAAGGCTGCACACTACTCGCAGTGTTATGCGGTAAAGTTATAGTTAGAGAGAAGACGAAGGCCAGGCGGAGGTCTTCTTACCCCTTTCCAGAGCTTGTTTCTTCTGGTCGCTTAGAGGTTCATACCCTTACTAACCCTACATTTGATAGCTTTCGAGCAACTCAGAAAGCATTGGAACCTAATATATTGTACTTCCAAGGGGAGCAGCTTGAAAATGAGGCAGAGATTGGCTCAATTGTCTGGGAAACTGTTGATGTATCAGAGCCTCAAACCCTCAGTTCACTTCTCTCTGCTCCTCTTCCCACCATTGTTTACTTAGAGGTTCCTAACAGTGAAAAGCTTGCACAGGCAATTCACTCTAAGGGGGTTCCATACGTGATATATTGGAAGAATGCATTTTCATCTTATGCAGCTTCCAACTTTAGGCAAGCAATCTTATCAGTTGTACAAAGTTCATGTAGCCATACATGGGATGCCTTTCAACTTGCAAATGCTTCATTTCGGCTTTATTGTATTAGAAACAACTGTGTAATGTCTGATAACAGCCAGAAAAACAGTGGCAAGCTTGGGCCTCGTCTTTTGGGGGATGCTCCCAAGATTGACATTGTTCATCCTGAGAGAGAAGTGATAGGCGATGAAAGCCCATCAGATGCTCTTCCTCCCATTAAAATATATGATGAAAACATAGACATGAGGTTTCTTATATGTGGAGTGCCATGCACTTTGGATGCTTTCTTACTGGGCTCTCTAGAAGATGGACTCAATGCACTTTTAAATATTGAAATTCGTGGGTGTAAACTTCATAACAGAGTTAGTGCAACACCACCACCTCTCCAAGCTGGAACCTTTACACGTGGGGTTGTGACTATGCGTTGTGACCTCACAACATGCAGTTCTGCTCACATCTCACTTCTTGTGTCTGGTAGTGCACAGACTTGTTTTGATGATCAGCTTCTTGAAAGTTACATTAAGAATGAACTTATCGAAAAGAGTCAGCTTGTTCGTGCTCTGCCAAATAGTGATGATAGCAAATTAGCATTGCCTGATTCTCTGAACTTTGGTTCAGTTGCCTGTGGGGCATCTGTATTTGAAGTGCGCATGAAGCTCCCAACATGGGCTGCCCAGGTTTTGAAGCATCTGGCACCTGAGATTTCTTATCGAAGCCTTGTTACACTTGGAATTGCTAGTGTTCAGGGGACTCCAGTGGCTTCCTTTGAGAAAGAAGATGCAGATCGCCTGCTTTTCTTCTGTACTAGACAAGGAAAGGAGTCAACTGTAGAAGATGTTTTTCATAATATGCCAAGATGGTGCTCCTTTTTTACCAGTGAGAGGTCCAGGCCTAATCCAGTATCAAAACCTATCCACTGTGCTAAATCAGTTGGGGGAAATGGAATCATCCATAAAAAAATTGACAAGAGTTGTAATGATAAAAGATCAGCTGAGGGGATCAATACATCTATTTTGAATCCACGGAAGAGGTTTAAGATTGCTGCAATGAGGCCTATTCCTCACTTGAAACAGCATCGGATGCTTCCTTTCTCAAGGATACCGGAGACGGATGCCTATGATGGAAGCCAGATGAAGCCTAACCTGTCTATTGTCACTTCTATAAAGCCGAACTCTGTGCCTGCAGCTCCTTTAAGTCAGAGAAAATCGATGTCAAGTTCTCTCCATACTCAGCCGATAGTTGCTTTAAATCCACTTCCTATGAAGAAGCATGGTTGTAGCCGGGCTCCTATTCAAGTTTGTTCTGAAGAAGAGTTCTTGAAAGATGTGATGCAATTCTTGGTTCTTCGTGGACATAGCAGACTAGTGCCTCAAGGTGGCTTGTCTGAGTTCCCTGATGCTATTCTTAATGCAAAGCGGCTTGATCTGTACAATTTGTACAGAGAGGTGGTGTCAAGAGGAGGTTTTTATGTTGGGAATGGCATTAATTGGAAGGGGCAGGTCTTTTCAAAGATGCGAAACCACACATTGAGCAATAGAATGACTGGCGTGGGGAATACACTAAAAAGGCATTACGAAACGTACTTGCTGGAGTACGAATTAGCGCATGATGATGTTGATGGAGAGTGTTGCTTGTTGTGTCACAGTAGCGCTCCTGGCGATTGGGTTAATTGCGGGTTATGCGGGGAGTGGGCTCACTTTGGTTGTGATAGAAGGCAAGGACTCGGTACCTTCAAGGATTATGCGAAAACGGACGGTTTGGAATACATATGCCCGCATTGCAGTCTCACGAATTACAGTAATAAGATGAAGCCCTCAAAGATGGCCAATGGTTATTCTAACGCAGCTCTGCCTCGGCAGTTGTAACCCCACCTTAGTTTATTTTATTTTTTCTCTATTATAGCATATATATATATATGCCACACTTTATTTCTCTTTTGATAAGGGCTCCGGATTCATTGTGGGGCTGATTTGTTATATAGCTCAGGTCTAGTCAGTATTACTAGGTTTTTAAGTCATGTTTTAATGTACTTTCTAGTAATTGCAATGAATGAAAGAAAAAAAAAAATCTAAAATCCTTCCATTCCATGCCTGCAATTGATAAGTGCCAC

Network for GWHGAAEX016540

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01388.20	ARID	594	691	2.60E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	143.270
SRP064423	SRR2545915	Juvenile tuber	68.530
SRP108465	SRR5643513	five period of Gastrodia elata	42.870
	SRR5643514	five period of Gastrodia elata	45.930
	SRR5643515	five period of Gastrodia elata	46.460
	SRR5643524	five period of Gastrodia elata	44.870
	SRR5643525	five period of Gastrodia elata	45.910
	SRR5643528	five period of Gastrodia elata	34.230
	SRR5643658	five period of Gastrodia elata	40.200
	SRR5643659	five period of Gastrodia elata	67.330
	SRR5643660	five period of Gastrodia elata	96.990
	SRR5643661	five period of Gastrodia elata	61.250
	SRR5643662	five period of Gastrodia elata	53.360
	SRR5643663	five period of Gastrodia elata	71.950
	SRR5643664	five period of Gastrodia elata	64.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	66.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	48.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	53.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	101.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	117.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	144.280
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	79.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	91.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.130
SRP279888	Gastro	Gastrodia elata tuber	53.02
	Juven	Juvenile tuber	70.34
	Mother_Gastro	Mother tuber of Gastrodia elata	71.31
	Mother_Juven	Mother tuber of Juvenile	56.63