Gene detail

Detail information of GWHGAAEX016544/evm.TU.scaffold_77.65_evm.TU.scaffold_77.66

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2416	2.00E-66	Acinus (induces apoptotic chromatin condensation)
nr	gi\|672157432\|ref\|XP_008798424.1\|	1.07E-141	PREDICTED: apoptotic chromatin condensation inducer in the nucleus-like [Phoenix dactylifera]
trEMBL	tr\|B9H574\|B9H574_POPTR	2.00E-125	SAP domain-containing family protein {ECO:0000313\|EMBL:EEE93325.1}
TAIR	AT4G39680	2.00E-66	SAP domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000075	2644136	2659298	-

Transcript Sequence
>GWHTAAEX016544 GCTTAGTCTCCCATTCTTGAGCGATTTGAAGATACCTCAAAGTGCACGGAAAAGACAGCGCAGGCGCAGCACCTAAGAACCCTAGAATCGGAAGGGGCCTTATTCTCGCCTCCCACCCTTTCTCCCTCTCCAGTCTCTATTGGAGATCTTCGCTTTTATCTATCTTTTACCGCTCGCTCTCTTTTCTTCCTTTTTTCCATTTCTATCTTGCGGAAATCACCTTCCTCTTTTTTCTTTATTGTTGTTGTTTTTTTAAATCTTGTTTTTCAGGAAGAAATCGAGGTTCTCAGCGTCTGTGTCCGAGAGTTGTTTTTTCTAGGATTTATACCGATGAAATTTCGGTTTTGTTCAGCTAATGGCTTTTTTCTGTTCTGAAATTAGGGTTTTTCGTTCGGTTCTTGTCTGAACATCGATCTTGGTTCGTCCCTCTAAGCCTACCATCGAAGACTTCTTGATTAGGAAGACTAAACTGAACTGCTTTTGCCATACTAAAAAGATGATGTCTCAAAACCCTGTGCTAGATAATAAACCCATTGACCAATGGAAAGTTACTGAGCTACGAGAAGAGCTTCGAAGAAGAAAATTGGTTACTAAAGGTGTTAAAGAGGAACTTGTTAAGCGATTAGATGAAGCCATACAGAAAGAAATGAATTCTATAAATGGAGTTGATTTGGGAAACAGTGTAAATCACAATGCAACTATAAAAAATTCAGAAGAAGAGGATACTGAGTCTGAGAGCAAGGATAATACTCGAGCAACTGATGATAGTAATGAAACTGATAAAGATGTAGTTATGGTAGACAGCAACAATCCTGTTGTCAGTACCAACCTTGGTAGTGAAGATCAAAATGAGAATGCAGATGAAGCTTTAGGTGCATCTAGAACAATTGAACAGAAGGAAGTAGTTACAAATGATTTGGTGGATGACACGTTTGGTGATCGTAATGTTATTATCCAATCTGATATCGATCCAGAAAATAGTACAAAGTGCGAGGATCTGAGGGAAGATAATGCAGCGGTCCATTCAGAACGGAGCATTCAGGTATCTGAAATCAGCCAAGATTTAGGGTTACAAGTAAAGTATGAGTCATTTTCTACTGATTCTGCATCCATTAATGAAAAGAATTATGTCAAGGATAACCTCAATGATCATAATTTCCCTTTAGAACTAGAAGTCGTTAAGCAGGAGGTGCAACCATCATCCAGCGGCACTGGTGGTGAGGACTTTTGCATGGTTGTCGATGAGCAAGCAGTGAGAACAAACTGTGTAGCTGATGAGCAGCAAGATGCGGATAAAAGCTTCGTCTCTGATGATCTAGAGGTGAGCCAAAAGATCTTATCAAATGATCAAGAGGCAAACTACAACGGATACAATAAGCAAATTATTGTTCAGAACCATATAACTTTTCAGCAACCATTGATTGTAAAACATGCATCTTTGGAAGTTGCAGAGACAGAGGCTGCTCTGATTGTGAACTGCCCGGTGAAGGAAGATTGTGTTGATGCTGGTTCTCTTGAAAAATTGAATCTTGACAGGAGCTCTGGTGATGAATCAGTTGATGATGATTTGCTGGAAAATAAGCATTTGGAAGCAGATACCAAGTTGCCAGAGCCCTTGGTTAAAATTGAGGACAATGCTTATGATGTAATAGAGAAAAAATTTGTTGTTGATATAAGTGACAAATTTTCTCATGAAATAAAGGATATTGCAGCTGAAGATGTGAAACAAACAGTTCCAACTGAAAAGAGAAAACTGGAAGAAGTTGAAGTTGCCGGAAATAATGATGCTCCCAAGCGGCAACGGCGGTGGAATACTGATGCTATTAAGATTCCTCAGGTGTCAGAACAGAAAATGCATCTAAGCACTCCAACGCCCAAGGTTAATAAAACAGTTCAACCAGAACTTCGTCGCTCTTTCAGTAGGACAAATTCGACATTGAGTGAAGAACCTTTCAAAGAGCGTGTTGTGCCAACGCCAAAGAGACCAGCAACAACATCTCTTAGAATTGACAATTTTCTGCGCCCTTTCACTCTGAAAGCCGTCCAAGAATTGCTTGCAAAAACTGGAAATGTGTGTGATTTCTGGATGGATCATATCAAGACTCACTGCTATGTAACTTATTCATCGGCGGAAGAGGCTGCGGGAACCCGAAATGCAGTTTACAATCTGCAGTGGCCTCCAAACGGAGGACGCCTCCTCATGGCCGAGTTTGTCGATCCCCAAGAAGTGAAGATACGCATGGAGGCGCCTCCTCCGCCGCCCCAATCGCCAGTCATCCCCGCTGTCCCAGCGGCAGCGCCCATCAAGCAGTTGCCCGCTCCGCCCCTTCAACAGAAGGCCCAGCCGCCGTCCCGTCCTCAGAACCAACCGAGGCAGCAGCCGATCCTTCCTCCCCCACCCCCGCAGATCACTCAGCTGCCACCCCCGCCTCCGCAGCTCGCTCCGAACCCTAGTAACATTATTCCGAGGGAGAGGCTCCCTCCCCCACCGAAGAAGCCTGATCCACCCGTCCTCACGCTGGACGACCTCTTCAAGAAGACAAAAGCAACCCCGCGTATCTATTACTTGCCCCTGTCAGAGGAGCAAATCGCAGCTAAGTCAGCGGCGCCAGGAAAGGGCGGCGCAGCCCGTCCCCACTAGCTCTGGTTTGCTTGAAAAGAAAAGAGACCAGCGGTTCTCAATTTTTTACTTTGTTTTGTTTGGAGGCCTAACTTGCTCAATCTCTTAGGCTATTCTGCGTATTGATAGAAAAAGGGAGACAGTTAAGCCCTACTTGGGGAGGTGTTGTGTGGGAGGTCAATCGCTCTTTTATATGATTGTTTGTAGTTTTTCTTGTTGAGCGATACGTATTATATATATGTGGACGGATTGCTCAGTCGGTCTCTTTGCTTTTAGAGAACATTTCAGACTTTGGATGGATGCTTTGCCTTATTATCATATTATCATTAAAGGCTGCTGCTATGTTCCGTCATGTTTGCCAGTATCATTTTAGCCAATCCTTTTTTTAGCAACAGATTTTGAAAAAGTAACCACTTG

Network for GWHGAAEX016544

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02037.26	SAP	14	46	2.50E-09
PF16294.4	RSB_motif	666	703	8.70E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12875	ACIN1, ACINUS	Spliceosome	map03040
		RNA transport	map03013
		mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	174.270
SRP064423	SRR2545915	Juvenile tuber	127.550
SRP108465	SRR5643513	five period of Gastrodia elata	99.900
	SRR5643514	five period of Gastrodia elata	91.390
	SRR5643515	five period of Gastrodia elata	90.550
	SRR5643524	five period of Gastrodia elata	87.470
	SRR5643525	five period of Gastrodia elata	101.800
	SRR5643528	five period of Gastrodia elata	74.650
	SRR5643658	five period of Gastrodia elata	91.910
	SRR5643659	five period of Gastrodia elata	113.460
	SRR5643660	five period of Gastrodia elata	139.770
	SRR5643661	five period of Gastrodia elata	114.980
	SRR5643662	five period of Gastrodia elata	107.710
	SRR5643663	five period of Gastrodia elata	114.270
	SRR5643664	five period of Gastrodia elata	128.680
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	142.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	152.030
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	131.510
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	166.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	179.560
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	190.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	155.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	160.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	113.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	134.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	112.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	112.650
SRP279888	Gastro	Gastrodia elata tuber	143.29
	Juven	Juvenile tuber	148.74
	Mother_Gastro	Mother tuber of Gastrodia elata	145.49
	Mother_Juven	Mother tuber of Juvenile	138.25