Detail information of GWHGAAEX016551/evm.TU.scaffold_77.78


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG18640Ubiquitin-specific protease
nrgi|743773078|ref|XP_010916869.1|0PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Elaeis guineensis]
Swissprottr|O24454|UBP3_ARATH0Ubiquitin carboxyl-terminal hydrolase 3
trEMBLtr|A0A067LEL9|A0A067LEL9_JATCU0Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}
TAIRAT4G399100ubiquitin-specific protease 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007530094903033667+
Transcript Sequence

Network for GWHGAAEX016551

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00443.28UCH253612.70E-61
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUSP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0016579Biological Processprotein deubiquitination
GO:0036459Molecular Functionthiol-dependent ubiquitinyl hydrolase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms59.770
SRR2545915Juvenile tuber57.350
SRP108465SRR5643513five period of Gastrodia elata64.190
SRR5643514five period of Gastrodia elata63.750
SRR5643515five period of Gastrodia elata64.140
SRR5643524five period of Gastrodia elata63.360
SRR5643525five period of Gastrodia elata80.300
SRR5643528five period of Gastrodia elata79.340
SRR5643658five period of Gastrodia elata86.830
SRR5643659five period of Gastrodia elata59.410
SRR5643660five period of Gastrodia elata61.230
SRR5643661five period of Gastrodia elata61.300
SRR5643662five period of Gastrodia elata63.640
SRR5643663five period of Gastrodia elata64.430
SRR5643664five period of Gastrodia elata64.270
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_149.080
SRR6049655Rhizomagastrodiae_C368-T10_good_162.300
SRR6049656Rhizomagastrodiae_C368-T07_good_144.510
SRR6049657Rhizomagastrodiae_C368-T07_good_154.870
SRR6049658Rhizomagastrodiae_C368-T04_good_146.910
SRR6049659Rhizomagastrodiae_C368-T04_good_144.960
SRR6049660Rhizomagastrodiae_C368-T01_good_147.040
SRR6049661Rhizomagastrodiae_C368-T04_good_143.770
SRR6049662Rhizomagastrodiae_C368-T01_good_144.250
SRR6049663Rhizomagastrodiae_C368-T01_good_142.390
SRR6049664Rhizomagastrodiae_C368-T10_good_149.920
SRR6049665Rhizomagastrodiae_C368-T10_good_149.920
SRP279888GastroGastrodia elata tuber 67.74
JuvenJuvenile tuber78.63
Mother_GastroMother tuber of Gastrodia elata 82.43
Mother_JuvenMother tuber of Juvenile 77.65