Detail information of GWHGAAEX016556/evm.TU.scaffold_77.85
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0851 | 0 | Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins |
| nr | gi|743773752|ref|XP_010917230.1| | 0 | PREDICTED: uncharacterized protein LOC105041866 [Elaeis guineensis] |
| Swissprot | tr|Q9SKI4|RFA1A_ARATH | 0 | Replication protein A 70 kDa DNA-binding subunit A |
| trEMBL | tr|D7TCH6|D7TCH6_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI27834.3} |
| TAIR | AT2G06510 | 0 | replication protein A 1A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000075 | 3334304 | 3337080 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016556
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04057.11 | Rep-A_N | 5 | 97 | 3.90E-27 |
| PF01336.24 | tRNA_anti-codon | 192 | 273 | 1.00E-07 |
| PF16900.4 | REPA_OB_2 | 302 | 405 | 1.80E-27 |
| PF08646.9 | Rep_fac-A_C | 464 | 613 | 1.10E-49 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07466 | RFA1, RPA1, rpa | DNA replication | map03030 |
| Nucleotide excision repair | map03420 | ||
| Mismatch repair | map03430 | ||
| Homologous recombination | map03440 | ||
| Fanconi anemia pathway | map03460 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006260 | Biological Process | DNA replication |
| GO:0006281 | Biological Process | DNA repair |
| GO:0006310 | Biological Process | DNA recombination |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.240 |
| SRR2545915 | Juvenile tuber | 31.600 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.860 |
| SRR5643514 | five period of Gastrodia elata | 15.520 | |
| SRR5643515 | five period of Gastrodia elata | 15.520 | |
| SRR5643524 | five period of Gastrodia elata | 15.940 | |
| SRR5643525 | five period of Gastrodia elata | 16.620 | |
| SRR5643528 | five period of Gastrodia elata | 19.720 | |
| SRR5643658 | five period of Gastrodia elata | 17.180 | |
| SRR5643659 | five period of Gastrodia elata | 24.970 | |
| SRR5643660 | five period of Gastrodia elata | 32.770 | |
| SRR5643661 | five period of Gastrodia elata | 29.390 | |
| SRR5643662 | five period of Gastrodia elata | 26.690 | |
| SRR5643663 | five period of Gastrodia elata | 25.140 | |
| SRR5643664 | five period of Gastrodia elata | 31.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 32.550 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 35.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.510 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.54 |
| Juven | Juvenile tuber | 21.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 48.03 | |
| Mother_Juven | Mother tuber of Juvenile | 43.05 |