Detail information of GWHGAAEX016564/evm.TU.scaffold_77.97
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|124021735|ref|YP_001016042.1| | 4.00E-41 | heat shock protein GrpE [Prochlorococcus marinus str. MIT 9303] |
| KOG | KOG3003 | 6.00E-56 | Molecular chaperone of the GrpE family |
| nr | gi|743817275|ref|XP_010930882.1| | 9.87E-88 | PREDICTED: grpE protein homolog, mitochondrial [Elaeis guineensis] |
| trEMBL | tr|M0TQW9|M0TQW9_MUSAM | 2.00E-83 | GrpE protein homolog {ECO:0000256|RuleBase:RU000640} |
| TAIR | AT5G17710 | 6.00E-56 | Co-chaperone GrpE family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000075 | 3659739 | 3684987 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016564
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01025.18 | GrpE | 122 | 277 | 1.00E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006457 | Biological Process | protein folding |
| GO:0000774 | Molecular Function | adenyl-nucleotide exchange factor activity |
| GO:0051087 | Molecular Function | chaperone binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 30.130 |
| SRR2545915 | Juvenile tuber | 23.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.380 |
| SRR5643514 | five period of Gastrodia elata | 7.100 | |
| SRR5643515 | five period of Gastrodia elata | 7.000 | |
| SRR5643524 | five period of Gastrodia elata | 6.610 | |
| SRR5643525 | five period of Gastrodia elata | 9.750 | |
| SRR5643528 | five period of Gastrodia elata | 11.350 | |
| SRR5643658 | five period of Gastrodia elata | 10.430 | |
| SRR5643659 | five period of Gastrodia elata | 15.670 | |
| SRR5643660 | five period of Gastrodia elata | 15.760 | |
| SRR5643661 | five period of Gastrodia elata | 15.170 | |
| SRR5643662 | five period of Gastrodia elata | 20.510 | |
| SRR5643663 | five period of Gastrodia elata | 16.880 | |
| SRR5643664 | five period of Gastrodia elata | 19.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.240 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.200 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.30 |
| Juven | Juvenile tuber | 5.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.31 | |
| Mother_Juven | Mother tuber of Juvenile | 4.99 |