Detail information of GWHGAAEX016566/evm.TU.scaffold_77.99


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08002.00E-30FOG: Predicted E3 ubiquitin ligase
nrgi|743807121|ref|XP_010927985.1|3.49E-74PREDICTED: uncharacterized protein LOC105049900 [Elaeis guineensis]
Swissprottr|P0CH30|RING1_GOSHI2.00E-19E3 ubiquitin-protein ligase RING1
trEMBLtr|M0TTA4|M0TTA4_MUSAM8.00E-67Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P24510_001}
TAIRAT3G023402.00E-30RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007537808223787295-
Transcript Sequence

Network for GWHGAAEX016566

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_22422841.30E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.010
SRR2545915Juvenile tuber35.920
SRP108465SRR5643513five period of Gastrodia elata33.750
SRR5643514five period of Gastrodia elata35.560
SRR5643515five period of Gastrodia elata36.770
SRR5643524five period of Gastrodia elata35.200
SRR5643525five period of Gastrodia elata45.390
SRR5643528five period of Gastrodia elata52.820
SRR5643658five period of Gastrodia elata37.770
SRR5643659five period of Gastrodia elata55.060
SRR5643660five period of Gastrodia elata63.370
SRR5643661five period of Gastrodia elata55.400
SRR5643662five period of Gastrodia elata70.520
SRR5643663five period of Gastrodia elata58.520
SRR5643664five period of Gastrodia elata56.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_138.390
SRR6049655Rhizomagastrodiae_C368-T10_good_120.240
SRR6049656Rhizomagastrodiae_C368-T07_good_130.450
SRR6049657Rhizomagastrodiae_C368-T07_good_130.400
SRR6049658Rhizomagastrodiae_C368-T04_good_132.390
SRR6049659Rhizomagastrodiae_C368-T04_good_134.130
SRR6049660Rhizomagastrodiae_C368-T01_good_130.690
SRR6049661Rhizomagastrodiae_C368-T04_good_136.710
SRR6049662Rhizomagastrodiae_C368-T01_good_131.120
SRR6049663Rhizomagastrodiae_C368-T01_good_130.600
SRR6049664Rhizomagastrodiae_C368-T10_good_140.400
SRR6049665Rhizomagastrodiae_C368-T10_good_140.400
SRP279888GastroGastrodia elata tuber 71.07
JuvenJuvenile tuber51.67
Mother_GastroMother tuber of Gastrodia elata 65.04
Mother_JuvenMother tuber of Juvenile 86.72