Detail information of GWHGAAEX016569/evm.TU.scaffold_77.104


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|319956211|ref|YP_004167474.1|2.00E-20cation diffusion facilitator family transporter [Nitratifractor salsuginis DSM 16511]
KOGKOG14852.00E-176Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily)
nrgi|293332327|ref|NP_001167840.1|0uncharacterized protein LOC100381541 [Zea mays]
Swissprottr|Q10PP8|MTP4_ORYSJ0Metal tolerance protein 4
trEMBLtr|C0HGV8|C0HGV8_MAIZE0Uncharacterized protein {ECO:0000313|EMBL:ACN26261.1, ECO:0000313|EnsemblPlants:GRMZM2G118497_P01}
TAIRAT3G580602.00E-176Cation efflux family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007540435604050360+
Transcript Sequence

Network for GWHGAAEX016569

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01545.20Cation_efflux1153079.00E-27
PF16916.4ZT_dimer3123871.40E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006812Biological Processcation transport
GO:0055085Biological Processtransmembrane transport
GO:0008324Molecular Functioncation transmembrane transporter activity
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.000
SRR2545915Juvenile tuber29.080
SRP108465SRR5643513five period of Gastrodia elata8.800
SRR5643514five period of Gastrodia elata13.340
SRR5643515five period of Gastrodia elata11.020
SRR5643524five period of Gastrodia elata9.500
SRR5643525five period of Gastrodia elata19.170
SRR5643528five period of Gastrodia elata20.020
SRR5643658five period of Gastrodia elata20.850
SRR5643659five period of Gastrodia elata7.710
SRR5643660five period of Gastrodia elata6.820
SRR5643661five period of Gastrodia elata5.950
SRR5643662five period of Gastrodia elata5.880
SRR5643663five period of Gastrodia elata7.770
SRR5643664five period of Gastrodia elata6.500
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.770
SRR6049655Rhizomagastrodiae_C368-T10_good_19.480
SRR6049656Rhizomagastrodiae_C368-T07_good_18.330
SRR6049657Rhizomagastrodiae_C368-T07_good_18.800
SRR6049658Rhizomagastrodiae_C368-T04_good_19.420
SRR6049659Rhizomagastrodiae_C368-T04_good_17.920
SRR6049660Rhizomagastrodiae_C368-T01_good_14.900
SRR6049661Rhizomagastrodiae_C368-T04_good_110.740
SRR6049662Rhizomagastrodiae_C368-T01_good_115.290
SRR6049663Rhizomagastrodiae_C368-T01_good_16.520
SRR6049664Rhizomagastrodiae_C368-T10_good_112.070
SRR6049665Rhizomagastrodiae_C368-T10_good_112.070
SRP279888GastroGastrodia elata tuber 10.05
JuvenJuvenile tuber8.62
Mother_GastroMother tuber of Gastrodia elata 9.21
Mother_JuvenMother tuber of Juvenile 16.22