Detail information of GWHGAAEX016570/evm.TU.scaffold_77.105


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|15791090|ref|NP_280914.1|4.00E-79replication factor C small subunit [Halobacterium sp. NRC-1]
KOGKOG09900Replication factor C, subunit RFC5
nrgi|672131268|ref|XP_008789193.1|0PREDICTED: replication factor C subunit 3 isoform X2 [Phoenix dactylifera]
Swissprottr|Q6YZ54|RFC3_ORYSJ0Replication factor C subunit 3
trEMBLtr|M0TGX2|M0TGX2_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P12340_001}
TAIRAT1G774700replication factor C subunit 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007540507594077762-
Transcript Sequence

Network for GWHGAAEX016570

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00004.28AAA691905.50E-16
PF08542.10Rep_fac_C2573422.90E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10756RFC3_5 DNA replication map03030
Nucleotide excision repairmap03420
Mismatch repairmap03430

Gene Ontology

GO term OntologyName
GO:0006260Biological ProcessDNA replication
GO:0005524Molecular FunctionATP binding
GO:0003677Molecular FunctionDNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms67.220
SRR2545915Juvenile tuber93.950
SRP108465SRR5643513five period of Gastrodia elata48.940
SRR5643514five period of Gastrodia elata52.090
SRR5643515five period of Gastrodia elata46.200
SRR5643524five period of Gastrodia elata52.180
SRR5643525five period of Gastrodia elata24.180
SRR5643528five period of Gastrodia elata16.240
SRR5643658five period of Gastrodia elata18.540
SRR5643659five period of Gastrodia elata71.410
SRR5643660five period of Gastrodia elata75.160
SRR5643661five period of Gastrodia elata86.940
SRR5643662five period of Gastrodia elata72.790
SRR5643663five period of Gastrodia elata72.660
SRR5643664five period of Gastrodia elata79.500
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_162.630
SRR6049655Rhizomagastrodiae_C368-T10_good_159.580
SRR6049656Rhizomagastrodiae_C368-T07_good_163.290
SRR6049657Rhizomagastrodiae_C368-T07_good_158.850
SRR6049658Rhizomagastrodiae_C368-T04_good_151.920
SRR6049659Rhizomagastrodiae_C368-T04_good_148.620
SRR6049660Rhizomagastrodiae_C368-T01_good_156.920
SRR6049661Rhizomagastrodiae_C368-T04_good_150.650
SRR6049662Rhizomagastrodiae_C368-T01_good_168.010
SRR6049663Rhizomagastrodiae_C368-T01_good_164.710
SRR6049664Rhizomagastrodiae_C368-T10_good_164.120
SRR6049665Rhizomagastrodiae_C368-T10_good_164.120
SRP279888GastroGastrodia elata tuber 105.33
JuvenJuvenile tuber94.86
Mother_GastroMother tuber of Gastrodia elata 16.68
Mother_JuvenMother tuber of Juvenile 34.69