Detail information of GWHGAAEX016571/evm.TU.scaffold_77.107


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG10392.00E-70Predicted E3 ubiquitin ligase
nrgi|672176263|ref|XP_008808204.1|6.44E-180PREDICTED: E3 ubiquitin-protein ligase makorin isoform X2 [Phoenix dactylifera]
Swissprottr|Q5ZA07|C3H41_ORYSJ2.00E-164E3 ubiquitin-protein ligase makorin
trEMBLtr|M0SBK2|M0SBK2_MUSAM1.00E-170Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P03840_001}
TAIRHS147307652.00E-70Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007541052974158551-
Transcript Sequence

Network for GWHGAAEX016571

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00642.23zf-CCCH1371571.60E-05
PF00097.24zf-C3HC43123691.50E-07
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms216.940
SRR2545915Juvenile tuber172.500
SRP108465SRR5643513five period of Gastrodia elata69.570
SRR5643514five period of Gastrodia elata58.290
SRR5643515five period of Gastrodia elata70.350
SRR5643524five period of Gastrodia elata57.290
SRR5643525five period of Gastrodia elata73.270
SRR5643528five period of Gastrodia elata33.640
SRR5643658five period of Gastrodia elata51.290
SRR5643659five period of Gastrodia elata185.150
SRR5643660five period of Gastrodia elata193.660
SRR5643661five period of Gastrodia elata206.640
SRR5643662five period of Gastrodia elata349.150
SRR5643663five period of Gastrodia elata279.110
SRR5643664five period of Gastrodia elata385.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1125.650
SRR6049655Rhizomagastrodiae_C368-T10_good_1104.550
SRR6049656Rhizomagastrodiae_C368-T07_good_179.590
SRR6049657Rhizomagastrodiae_C368-T07_good_1165.960
SRR6049658Rhizomagastrodiae_C368-T04_good_1123.320
SRR6049659Rhizomagastrodiae_C368-T04_good_1140.120
SRR6049660Rhizomagastrodiae_C368-T01_good_1110.020
SRR6049661Rhizomagastrodiae_C368-T04_good_192.260
SRR6049662Rhizomagastrodiae_C368-T01_good_150.420
SRR6049663Rhizomagastrodiae_C368-T01_good_155.820
SRR6049664Rhizomagastrodiae_C368-T10_good_145.750
SRR6049665Rhizomagastrodiae_C368-T10_good_145.750
SRP279888GastroGastrodia elata tuber 171.18
JuvenJuvenile tuber116.89
Mother_GastroMother tuber of Gastrodia elata 80.78
Mother_JuvenMother tuber of Juvenile 89.53