Gene detail

Detail information of GWHGAAEX016572/evm.TU.scaffold_77.108

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|427716417\|ref\|YP_007064411.1\|	1.00E-166	60 kDa chaperonin [Calothrix sp. PCC 7507]
KOG	KOG0356	0	Mitochondrial chaperonin, Cpn60/Hsp60p
nr	gi\|672157071\|ref\|XP_008798228.1\|	0	PREDICTED: ruBisCO large subunit-binding protein subunit alpha-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|P21239\|RUB1_BRANA	0	RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Precursor; Fragment)
trEMBL	tr\|M0RK22\|M0RK22_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P20970_001}
TAIR	AT2G28000	0	chaperonin-60alpha

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000075	4210241	4226971	+

Transcript Sequence
>GWHTAAEX016572 CAAGGAATCTAAATAATATTTCTCTATATTTTAACAACATAAAATAAAAGGATGGAGAATACTTCAGCCTCCTCGCGACGACGCGACGCTATCTTCTCATCCGCTTCTTCTGTTCTCGCTCTCTGTTGTTGCTCTTTCAGGCGAGCACGAGAATCGCAGCAGCGACCATTCCACCACCCAAGAAGACTTCCCCTTTTTTCAACTACTTCGTATTTTGCCGCAACAGCCGCAACAGCCGCAACAGCCGCGTGTTAAACCCTTAAACCCTACGTACCCCCGAAATAAAGGAATGTCTTCCTTTGCGGCATCAGTTTCCTTCTCCCACCGTGGCCTAGTTTCCTTCGTAAGCTCTTCCCCTTTCTCACTCGCATATTGTATTAACTACTGACCATTTCCTTCGAATTTTTCCTCACAAGTATCGGCAAACGAAATGGAACTGCAAATCAGTAATAAATATTTCTCCTTCACGAAGATTTTGGGTTAGGGCAGGACCTAAGAGGATATTTTTTGATAGCGATTGTAGAAGAGCGCTGCAAGCTGGAATCAATAAGCTCGCAGATGCCGTCTCTGTTACATTGGGGCCCAAAGGCCGCAATGTGGTTCTTGATGAGAACGAAGTACCTAAAGTTATTAATGATGGGGTTGCCATTGCTAGGGCTATAGAACTATCTGATCCATTTCAAAATGCCGGGGCAATGTTAATCCAGGAGGTTGCATGCAAGACTAATGATTCTGCTGGTGATGGAACAACCACGGCGATTATTTTGGCCCGAGAAATAATTAAATTAGGGTTATTTGCAATTTCTTGTGGTGCCTGCCCTGTTTCTTTAAAAAAAGGGATTGATAAAGCTGTTAGCGAAGCAGTTCAAATACTGAAGAAAAAGGCTATCCCTGTTAGGGGTAGAGAGGATTTAAAAGCTATTGCTTCCATATCTGCTGGGAATGATGACTTCATTGGTAACCTTATTGCTGAGACTATTGAATATATTGGGTATGATGGTATTATCTTAATTGAATCATCTTCAAGCTTTGATACGGCCATTGAAATTCAGGAAGGAATGAAGGTTGAGAAGGGCTATTTGTCTCCACACTTTATTACAAACCACGATAAATCACTTGTGGAATTCAAAAATGCTAAAATTCTTGTAACTGATCAGAAAGTTACAAATGTTAAGGATATTGTTCCTTTGCTAGAAAAGGCTACTCAATTAAGCGTGCCTTTGTTAATTATTGCTGAGGACATTTCAAGTAAAGTCTTGGCTACCTTGGTGCTCAATAAGTTGAGAGGAATAATAAATGTTGCTGCTATTAGATGCCCTGGGTTTGGTGATGGAAAGAAAGCTCTACTTCAAGACATTGCACTTATGACAGGTGCTGACTTTCTTGCAAGGGATTTGGGATTAACGATTGAGGGTGTCACTTCAGACCAGCTTGGCATTGCACATAAGGTAACCATAACTGAGAATTCAACAACTATTGTTGCTGACCCTAAAATGAAAGCTGAGATTCAGGCAAGAATATCTCAGATTAAGAGAGATTTGGCTAACACAGATAATTCCTACCAAGCAAAGAAGCTTTCCGAAAGGATTGCCAAGCTTTCTGGAGGTTTAGCTGTCATCAAGGTAGGAGCTGCTACTGAGGTAGAACTTGAAGATAGGAAACTCAGAATTGAGGATGCCAAGAGTGCTACTTATGCTGCCATTGATGAGGGCATATCACCTGGTGGTGGGGCCGCCTATGTGCACTTATCAAAGAACATTTCCAGTCTTATAGACCATATTCAAGATACAGATGAAAAGATTGGTGCTGATATTGTTCGAAAGGCACTTATCGTACCAGCATCATTGATTGCTAACAACGCGGGAGCCGATGGCTCCATGGTGGCGGCGAAGCTTCTTCTCACCAGCGACTGGAGAACTGGCTATAACGCACTGACGAACGAATTCGAAGATTTTCTTGATTCCGGTGTCATTGATCCCTGCAAGGTCTTGAGATGCGCTCTTCAAAATGCTGCCTCCATAGCCGGAATTCTTCTTACCACCCAAGCTATAATGGTTGATATAGTGAAAAGGCCCAAACCAGTTGTTCCTCTCGTTCCAGGAATTTCACCCTAACCTTTATCTAAAGTTGTATTCAAGTTGGAATCATATAGAATTTATCAAAAGAGCCATTACTTGCTCCTTGAATGGTGATCTTAAAAAGGTCTGCTTGATAATTCTGAAAATTTTCTTGGGTTATAAAATGAGATATACTGCATTTTTCTTGGGGAATATTGCAAAAACAGTCTCTTGAGTCTTGATGTTGTGCTTCTACTTATTAAATTGATGGTTTTGAGCACTAATGATCATTGACAAATTATTTTTATGAAAGTCATCCATTTGGCTATAATATACATCTTAGTTGGAAGTTTATTCTGTGAATTTTTATTATGTACTTCTCTTTGTGCGATGTGTTTTTTATATTATAGATCGTTTGATAGAGTGCTTTTTCTAATTTGTTAGATTGATTCAATTAAGGTGATTTATTTGTATTTGAAAAAGAGAGTTCATG

Network for GWHGAAEX016572

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00118.23	Cpn60_TCP1	2	455	4.90E-78

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0042026	Biological Process	protein refolding
GO:0006457	Biological Process	protein folding
GO:0005524	Molecular Function	ATP binding
GO:0005737	Cellular Component	cytoplasm

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.030
SRP064423	SRR2545915	Juvenile tuber	5.390
SRP108465	SRR5643513	five period of Gastrodia elata	6.650
	SRR5643514	five period of Gastrodia elata	7.490
	SRR5643515	five period of Gastrodia elata	6.420
	SRR5643524	five period of Gastrodia elata	8.050
	SRR5643525	five period of Gastrodia elata	5.560
	SRR5643528	five period of Gastrodia elata	5.490
	SRR5643658	five period of Gastrodia elata	3.930
	SRR5643659	five period of Gastrodia elata	5.050
	SRR5643660	five period of Gastrodia elata	5.680
	SRR5643661	five period of Gastrodia elata	4.750
	SRR5643662	five period of Gastrodia elata	5.020
	SRR5643663	five period of Gastrodia elata	4.390
	SRR5643664	five period of Gastrodia elata	4.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.270
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.930
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.320
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.740
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.420
SRP279888	Gastro	Gastrodia elata tuber	5.90
	Juven	Juvenile tuber	7.11
	Mother_Gastro	Mother tuber of Gastrodia elata	8.34
	Mother_Juven	Mother tuber of Juvenile	6.84