Detail information of GWHGAAEX016573/evm.TU.scaffold_77.109
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1769 | 2.00E-21 | Ubiquitin-like proteins |
| nr | gi|358344888|ref|XP_003636518.1| | 1.11E-35 | Small ubiquitin-related modifier [Medicago truncatula] |
| Swissprot | tr|P55857|SUMO1_ORYSJ | 9.00E-23 | Small ubiquitin-related modifier 1 |
| trEMBL | tr|G7ZWR8|G7ZWR8_MEDTR | 4.00E-36 | Small ubiquitin-related modifier {ECO:0000313|EMBL:AES83656.1} |
| trEMBL | tr|G7ZWR8|G7ZWR8_MEDTR | 3.00E-17 | Small ubiquitin-related modifier {ECO:0000313|EMBL:AES83656.1} |
| TAIR | AT4G26840 | 2.00E-21 | small ubiquitin-like modifier 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000075 | 4230851 | 4231603 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016573
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF11976.7 | Rad60-SLD | 19 | 87 | 8.80E-13 |
| PF11976.7 | Rad60-SLD | 94 | 162 | 8.10E-12 |
| PF11976.7 | Rad60-SLD | 169 | 239 | 6.50E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12160 | SUMO, SMT3 | RNA transport | map03013 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.610 |
| SRR2545915 | Juvenile tuber | 0.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.130 |
| SRR5643514 | five period of Gastrodia elata | 0.100 | |
| SRR5643515 | five period of Gastrodia elata | 0.250 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.130 | |
| SRR5643658 | five period of Gastrodia elata | 0.300 | |
| SRR5643659 | five period of Gastrodia elata | 0.540 | |
| SRR5643660 | five period of Gastrodia elata | 0.230 | |
| SRR5643661 | five period of Gastrodia elata | 0.120 | |
| SRR5643662 | five period of Gastrodia elata | 0.350 | |
| SRR5643663 | five period of Gastrodia elata | 0.450 | |
| SRR5643664 | five period of Gastrodia elata | 0.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.790 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.24 |
| Juven | Juvenile tuber | 0.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.80 | |
| Mother_Juven | Mother tuber of Juvenile | 0.19 |