Detail information of GWHGAAEX016577/evm.TU.scaffold_77.116
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1769 | 3.00E-21 | Ubiquitin-like proteins |
| nr | gi|358344888|ref|XP_003636518.1| | 2.19E-49 | Small ubiquitin-related modifier [Medicago truncatula] |
| Swissprot | tr|P55857|SUMO1_ORYSJ | 7.00E-23 | Small ubiquitin-related modifier 1 |
| trEMBL | tr|G7ZWR8|G7ZWR8_MEDTR | 8.00E-50 | Small ubiquitin-related modifier {ECO:0000313|EMBL:AES83656.1} |
| trEMBL | tr|G7ZWR8|G7ZWR8_MEDTR | 2.00E-40 | Small ubiquitin-related modifier {ECO:0000313|EMBL:AES83656.1} |
| trEMBL | tr|G7ZWR8|G7ZWR8_MEDTR | 3.00E-10 | Small ubiquitin-related modifier {ECO:0000313|EMBL:AES83656.1} |
| TAIR | AT4G26840 | 3.00E-21 | small ubiquitin-like modifier 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000075 | 4357659 | 4358447 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016577
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF11976.7 | Rad60-SLD | 20 | 87 | 1.00E-12 |
| PF11976.7 | Rad60-SLD | 94 | 162 | 3.10E-15 |
| PF11976.7 | Rad60-SLD | 169 | 240 | 2.40E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12160 | SUMO, SMT3 | RNA transport | map03013 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.100 |
| SRR2545915 | Juvenile tuber | 2.580 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.370 |
| SRR5643514 | five period of Gastrodia elata | 0.650 | |
| SRR5643515 | five period of Gastrodia elata | 0.230 | |
| SRR5643524 | five period of Gastrodia elata | 0.410 | |
| SRR5643525 | five period of Gastrodia elata | 0.870 | |
| SRR5643528 | five period of Gastrodia elata | 0.750 | |
| SRR5643658 | five period of Gastrodia elata | 0.660 | |
| SRR5643659 | five period of Gastrodia elata | 0.100 | |
| SRR5643660 | five period of Gastrodia elata | 0.110 | |
| SRR5643661 | five period of Gastrodia elata | 0.340 | |
| SRR5643662 | five period of Gastrodia elata | 0.780 | |
| SRR5643663 | five period of Gastrodia elata | 0.590 | |
| SRR5643664 | five period of Gastrodia elata | 1.230 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.610 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.170 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.24 |
| Juven | Juvenile tuber | 0.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.21 | |
| Mother_Juven | Mother tuber of Juvenile | 0.33 |