Detail information of GWHGAAEX016579/evm.TU.scaffold_77.121
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|479127161|ref|YP_005067121.1| | 3.00E-29 | iron-sulfur cluster assembly factor [Arthrospira platensis NIES-39] |
| KOG | KOG2358 | 7.00E-72 | NifU-like domain-containing proteins |
| nr | gi|743764639|ref|XP_010912528.1| | 1.11E-92 | PREDICTED: nifU-like protein 2, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|Q93W20|NIFU2_ARATH | 2.00E-81 | NifU-like protein 2, chloroplastic (Precursor) |
| trEMBL | tr|B6T8D2|B6T8D2_MAIZE | 6.00E-90 | NFU3 {ECO:0000313|EMBL:ACG33365.1} |
| TAIR | AT5G49940_1 | 7.00E-72 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000075 | 4596258 | 4600361 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016579
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01106.16 | NifU | 98 | 163 | 2.50E-24 |
| PF01106.16 | NifU | 179 | 240 | 5.40E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016226 | Biological Process | iron-sulfur cluster assembly |
| GO:0005506 | Molecular Function | iron ion binding |
| GO:0051536 | Molecular Function | iron-sulfur cluster binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 34.450 |
| SRR2545915 | Juvenile tuber | 35.720 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 42.890 |
| SRR5643514 | five period of Gastrodia elata | 44.160 | |
| SRR5643515 | five period of Gastrodia elata | 39.070 | |
| SRR5643524 | five period of Gastrodia elata | 44.880 | |
| SRR5643525 | five period of Gastrodia elata | 44.050 | |
| SRR5643528 | five period of Gastrodia elata | 41.600 | |
| SRR5643658 | five period of Gastrodia elata | 39.930 | |
| SRR5643659 | five period of Gastrodia elata | 36.320 | |
| SRR5643660 | five period of Gastrodia elata | 35.630 | |
| SRR5643661 | five period of Gastrodia elata | 40.550 | |
| SRR5643662 | five period of Gastrodia elata | 44.250 | |
| SRR5643663 | five period of Gastrodia elata | 46.070 | |
| SRR5643664 | five period of Gastrodia elata | 39.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 37.130 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 41.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 33.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 32.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 31.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 33.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 39.480 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 43.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 50.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 50.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 49.94 |
| Juven | Juvenile tuber | 46.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 54.21 | |
| Mother_Juven | Mother tuber of Juvenile | 50.89 |