Detail information of GWHGAAEX016580/evm.TU.scaffold_77.122


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|291287189|ref|YP_003504005.1|2.00E-13RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM 12809]
KOGKOG01081.00E-65mRNA cleavage and polyadenylation factor I complex, subunit RNA15
nrgi|672116726|ref|XP_008781534.1|3.41E-162PREDICTED: cleavage stimulation factor subunit 2-like [Phoenix dactylifera]
Swissprottr|Q9M9G6|CTF64_ARATH3.00E-86Cleavage stimulating factor 64 {ECO:0000303|PubMed:12379796}
trEMBLtr|B4FMY5|B4FMY5_MAIZE7.00E-122Uncharacterized protein {ECO:0000313|EMBL:ACF83478.1, ECO:0000313|EnsemblPlants:GRMZM2G174919_P01}
TAIRAT1G718001.00E-65cleavage stimulating factor 64

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007546068634651897-
Transcript Sequence

Network for GWHGAAEX016580

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_112828.10E-22
PF14327.5CSTF2_hinge1692328.20E-18
PF14304.5CSTF_C5055346.70E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14407CSTF2, RNA15 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0031124Biological ProcessmRNA 3'-end processing
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms24.120
SRR2545915Juvenile tuber25.590
SRP108465SRR5643513five period of Gastrodia elata25.140
SRR5643514five period of Gastrodia elata20.860
SRR5643515five period of Gastrodia elata21.910
SRR5643524five period of Gastrodia elata22.610
SRR5643525five period of Gastrodia elata31.640
SRR5643528five period of Gastrodia elata25.910
SRR5643658five period of Gastrodia elata34.820
SRR5643659five period of Gastrodia elata24.910
SRR5643660five period of Gastrodia elata24.170
SRR5643661five period of Gastrodia elata21.400
SRR5643662five period of Gastrodia elata23.210
SRR5643663five period of Gastrodia elata21.970
SRR5643664five period of Gastrodia elata23.020
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.010
SRR6049655Rhizomagastrodiae_C368-T10_good_134.640
SRR6049656Rhizomagastrodiae_C368-T07_good_121.680
SRR6049657Rhizomagastrodiae_C368-T07_good_124.260
SRR6049658Rhizomagastrodiae_C368-T04_good_122.640
SRR6049659Rhizomagastrodiae_C368-T04_good_124.840
SRR6049660Rhizomagastrodiae_C368-T01_good_122.520
SRR6049661Rhizomagastrodiae_C368-T04_good_121.180
SRR6049662Rhizomagastrodiae_C368-T01_good_113.810
SRR6049663Rhizomagastrodiae_C368-T01_good_118.720
SRR6049664Rhizomagastrodiae_C368-T10_good_120.970
SRR6049665Rhizomagastrodiae_C368-T10_good_120.970
SRP279888GastroGastrodia elata tuber 25.28
JuvenJuvenile tuber33.21
Mother_GastroMother tuber of Gastrodia elata 35.20
Mother_JuvenMother tuber of Juvenile 28.77