Gene detail

Detail information of GWHGAAEX016583/evm.TU.scaffold_78.3

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|186681873\|ref\|YP_001865069.1\|	9.00E-36	hypothetical protein Npun_F1419 [Nostoc punctiforme PCC 73102]
KOG	KOG0275	0	Conserved WD40 repeat-containing protein
nr	gi\|743768995\|ref\|XP_010914777.1\|	0	PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Elaeis guineensis]
Swissprot	tr\|Q8W117\|SMU1_ARATH	0	Suppressor of mec-8 and unc-52 protein homolog 1
trEMBL	tr\|M0TYM0\|M0TYM0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P08610_001}
TAIR	AT1G73720	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	48819	68504	+

Transcript Sequence
>GWHTAAEX016583 GATTTAACCTAACCTACCTAAATTTCCCCCTCCCAGCCGAAATTTTCCTCCTCGTACTTCTGTGGAGAGCCGATTAGGGTTTAGTTCTCCATGCCGAACACCGATCTTCTCCACGTTCGTGCGACAATCTCCACACGAGAGCCGATCTCCTCACTGAAGGGCGCCGATCTTCGTCCCTGCTGATGAGCGCCTCCCCTCCGTGCAAGCTCGACTACCTCCTCTTCGTCCCGACGGTCGAGCGTCGACCCTCCATATGAGGCAGTAGGCTGTTGGAAGCTCCTTAAGCCAAGTTGCAGCCCTTCGCCAAGCCGAGTAGCTCACTCATTCTTTGGCAGGGTGCAGCTACCCTTGCAGCTTTTTCTCTCCATTTTTCTTGGCCGAGCAGCAGTCGTTCTCTTCTTAAGCCGAGCTGCAGTCCTCGTCGTCCAGCCGAGCAACTCTTCTTCTTCATGGTTCAAATTCTCTCACACAGATCCTCCTCCTCGCTCACCGTCCAATGTCTTAAGGTTATTTGGCAATTTTTCTCTCAAATCGGTTGGCTTGAGAGATCATCCGACGGCTGCACTAAACCCTTCTTCTCGCTTATCCCCTATTTTCTAGGGTGGTGTTTTTGAGCTACAAATCGTATCTGCTTCTCACATTCAAATTATTTTGGGCAAGATGTCAACCCTAGAAATTGAAGCACGAGATGTGATAAAAATAGTCTTGCAATTTTGCAAGGAGAATTCCTTACATCAATCCTTTCAAGTATTACAAAATGAGTGCCAAGTTTCATTAAATACCGTGGACAGCCTTGAAACATTTATTGCTGATATAAATAGTGGAAGATGGGATGCTATTTTACCCCAGGTGTCTCAACTTAAACTTCCAAGGGACAAATTGGAGGACTTGTATGAACAGATAGTCTTAGAGATGATAGAGCTTCGGGAATTAGACACTGCACGTGCCATACTAAGGCAAACTCAGGCTATGGGGGTAATGAAACAAGAGCAGCCTGAGAGATATTTAAGACTCGAGCATTTGTTGGTGAGGACATATTTTGACCCCAATGAGGCTTATCAAGAATCAACTAAGGAGAAGCGTCGATCTCAAATAGCTCAAGCTCTTGCTACTGAAGTTAATGTTGTACCGCCATCTAGATTAATGTCTTTGATAGGCCAGGCACTTAAATGGCAGCAACATCAAGGAATGCTTCCTCCTGGAACACAATTTGATTTATTTAGAGGAACCACTGCCATGAAAAAGGATGAGGATGATATGTATCCAACCTCTCTTAGCCACCAAATAAAGTTTGGAAAGAAAAGTCACTCGGAATGTTCACGTTTCTCTCCTGATGGGCAGTATCTCGTTTCATGCTCAGTTGATGGGTTTATTGAGGTATGGGATTATATGAGTGGGAAGCTCAAGAAAGATCTTCAGTATCAGGCTGATGATTCCTTTATGATGCATGATGATGCTGTACTTTGTGTTGATTTCAGTCGAGATTCAGAAATGCTTGCATCTGGATCCCAAGATGGAAAAATCAAGGTTTGGCGAATAAGAACTGGTCAATGCTTACGGCGTCTTGAGCGTGCCCATTCACAAGGAGTTACTAGCCTCACATTTTCGCGTAATGGAAGCCAGCTTCTTAGTGCATCGTTTGATAGTACTGCAAGAATATATGGTCTTAAGTCTGGTAAAATGTTGAAAGAGTTTCGTGGTCACACTTCATATGTGAATGATGCAATATTCACAAATGATGGAAGCCGTATCATTACAGCTTCCAGTGATTGCACTGTGAAGGTGTGGGATATGAAATCAACCGACTGTTTACAGACATTCAAGCCACCGCCTCTTTTAAGGGGTGGTGATGCTTCGGTGAACTCTGTTCATCTGTTTCCAAAAAATACCGAACACATCATAGTGTGTAACAAGACATCATCAATTTATCTCATGACGCTTCAAGGGCAGGTAGTGAAGAGCTTTTCATCTGGTAAAAGAGAAGGTGGGGACTTTGTTGCTGCGTGTGTTTCACCAAAAGGTGAATGGATCTACTGTGTTGGCGAAGACATGAATTTGTATTGTTTCAGCCACCAGTCTGGCAAATTAGAACACTTGATGAAGGTTCATGAGAAGGATGTGATTGGTGTAACTCATCATCCTCACATGAATCTTGTCGCCACCTATGGAGAAGATTGCTCCCTGAAAATTTGGAAGCCTTGAGCTGTGGACTGAGCAAAATGCTTTTGCCGTGTTCTTCTGTAATTGAATCAAAAGTTTTGCTTTTAGCTTTCAGTGTTCAGACCAACAATTTAAAGTTCTTTAATTATTATGTTTTGTTTAAAAATTTTATTGTCGTCAGAGTACATTCATGAAACATTTAGAAGTTGTGTAAAAGTTTGTTTATTTTTAGAGCGAGAAGCGTTACGTTGTAATTTAAAATGCACATTTGTGCAATTGAAACTGTAATGTCACCCTCCAAAGCATATTCTTAGGATATAATTTTGCTCATGTTGAAAAGGAGTTCTAATTGGGAGCCA

Network for GWHGAAEX016583

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	219	242	0.00022
PF00400.31	WD40	263	291	3.30E-06
PF00400.31	WD40	296	334	0.0002
PF00400.31	WD40	340	377	1.70E-06
PF00400.31	WD40	477	512	0.15

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	38.550
SRP064423	SRR2545915	Juvenile tuber	33.960
SRP108465	SRR5643513	five period of Gastrodia elata	43.320
	SRR5643514	five period of Gastrodia elata	42.820
	SRR5643515	five period of Gastrodia elata	41.710
	SRR5643524	five period of Gastrodia elata	42.690
	SRR5643525	five period of Gastrodia elata	50.300
	SRR5643528	five period of Gastrodia elata	44.160
	SRR5643658	five period of Gastrodia elata	45.570
	SRR5643659	five period of Gastrodia elata	50.220
	SRR5643660	five period of Gastrodia elata	55.500
	SRR5643661	five period of Gastrodia elata	48.170
	SRR5643662	five period of Gastrodia elata	54.570
	SRR5643663	five period of Gastrodia elata	52.080
	SRR5643664	five period of Gastrodia elata	53.910
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	54.680
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	46.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	45.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	47.200
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	44.490
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	46.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	45.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	53.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	47.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	52.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	52.160
SRP279888	Gastro	Gastrodia elata tuber	90.32
	Juven	Juvenile tuber	62.64
	Mother_Gastro	Mother tuber of Gastrodia elata	51.76
	Mother_Juven	Mother tuber of Juvenile	64.82