Detail information of GWHGAAEX016587/evm.TU.scaffold_78.8


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|189501825|ref|YP_001957542.1|4.00E-13hypothetical protein Aasi_0393 [Candidatus Amoebophilus asiaticus 5a2]
KOGKOG01670FOG: Armadillo/beta-catenin-like repeats
nrgi|743860260|ref|XP_010942967.1|0PREDICTED: U-box domain-containing protein 4-like isoform X1 [Elaeis guineensis]
Swissprottr|O22193|PUB4_ARATH0U-box domain-containing protein 4
trEMBLtr|A0A061DNQ6|A0A061DNQ6_THECC0RING/U-box superfamily protein with ARM repeat domain isoform 1 {ECO:0000313|EMBL:EOX91593.1}
TAIRAT2G231400RING/U-box superfamily protein with ARM repeat domain

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000086190495199692-
Transcript Sequence

Network for GWHGAAEX016587

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04564.14U-box2333047.90E-22
PF00514.22Arm5786155.90E-10
PF00514.22Arm6176560.00015
PF00514.22Arm6606977.30E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016567Biological Processprotein ubiquitination
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.210
SRR2545915Juvenile tuber25.220
SRP108465SRR5643513five period of Gastrodia elata24.880
SRR5643514five period of Gastrodia elata24.480
SRR5643515five period of Gastrodia elata23.290
SRR5643524five period of Gastrodia elata23.490
SRR5643525five period of Gastrodia elata32.180
SRR5643528five period of Gastrodia elata26.200
SRR5643658five period of Gastrodia elata33.830
SRR5643659five period of Gastrodia elata21.630
SRR5643660five period of Gastrodia elata25.070
SRR5643661five period of Gastrodia elata20.470
SRR5643662five period of Gastrodia elata24.340
SRR5643663five period of Gastrodia elata26.960
SRR5643664five period of Gastrodia elata27.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_129.080
SRR6049655Rhizomagastrodiae_C368-T10_good_133.590
SRR6049656Rhizomagastrodiae_C368-T07_good_125.690
SRR6049657Rhizomagastrodiae_C368-T07_good_137.820
SRR6049658Rhizomagastrodiae_C368-T04_good_140.890
SRR6049659Rhizomagastrodiae_C368-T04_good_151.490
SRR6049660Rhizomagastrodiae_C368-T01_good_135.220
SRR6049661Rhizomagastrodiae_C368-T04_good_142.900
SRR6049662Rhizomagastrodiae_C368-T01_good_125.550
SRR6049663Rhizomagastrodiae_C368-T01_good_126.880
SRR6049664Rhizomagastrodiae_C368-T10_good_125.900
SRR6049665Rhizomagastrodiae_C368-T10_good_125.900
SRP279888GastroGastrodia elata tuber 28.89
JuvenJuvenile tuber38.27
Mother_GastroMother tuber of Gastrodia elata 31.75
Mother_JuvenMother tuber of Juvenile 29.88