Detail information of GWHGAAEX016588/evm.TU.scaffold_78.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428770320|ref|YP_007162110.1|1.00E-162uroporphyrinogen decarboxylase [Cyanobacterium aponinum PCC 10605]
KOGKOG28720Uroporphyrinogen decarboxylase
nrgi|695080225|ref|XP_009387562.1|0PREDICTED: uroporphyrinogen decarboxylase [Musa acuminata subsp. malaccensis]
Swissprottr|Q10LR9|DCUP2_ORYSJ0Uroporphyrinogen decarboxylase 2, chloroplastic (Precursor)
trEMBLtr|M0UAF8|M0UAF8_MUSAM0Uroporphyrinogen decarboxylase {ECO:0000256|RuleBase:RU000554}
TAIRAT2G404900Uroporphyrinogen decarboxylase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000086206032233355-
Transcript Sequence

Network for GWHGAAEX016588

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01208.16URO-D533892.90E-118
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01599hemE, UROD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0006779Biological Processporphyrin-containing compound biosynthetic process
GO:0004853Molecular Functionuroporphyrinogen decarboxylase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.380
SRR2545915Juvenile tuber14.800
SRP108465SRR5643513five period of Gastrodia elata40.670
SRR5643514five period of Gastrodia elata47.750
SRR5643515five period of Gastrodia elata48.860
SRR5643524five period of Gastrodia elata50.630
SRR5643525five period of Gastrodia elata28.720
SRR5643528five period of Gastrodia elata28.350
SRR5643658five period of Gastrodia elata24.630
SRR5643659five period of Gastrodia elata28.720
SRR5643660five period of Gastrodia elata27.040
SRR5643661five period of Gastrodia elata29.240
SRR5643662five period of Gastrodia elata38.270
SRR5643663five period of Gastrodia elata38.450
SRR5643664five period of Gastrodia elata32.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_130.130
SRR6049655Rhizomagastrodiae_C368-T10_good_128.570
SRR6049656Rhizomagastrodiae_C368-T07_good_128.930
SRR6049657Rhizomagastrodiae_C368-T07_good_124.910
SRR6049658Rhizomagastrodiae_C368-T04_good_118.520
SRR6049659Rhizomagastrodiae_C368-T04_good_112.120
SRR6049660Rhizomagastrodiae_C368-T01_good_120.820
SRR6049661Rhizomagastrodiae_C368-T04_good_122.410
SRR6049662Rhizomagastrodiae_C368-T01_good_142.160
SRR6049663Rhizomagastrodiae_C368-T01_good_125.010
SRR6049664Rhizomagastrodiae_C368-T10_good_129.260
SRR6049665Rhizomagastrodiae_C368-T10_good_129.260
SRP279888GastroGastrodia elata tuber 24.19
JuvenJuvenile tuber16.45
Mother_GastroMother tuber of Gastrodia elata 13.22
Mother_JuvenMother tuber of Juvenile 14.37