Detail information of GWHGAAEX016590/evm.TU.scaffold_78.11


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|661882223|emb|CDP14199.1|1.43E-27unnamed protein product [Coffea canephora]
Swissprottr|Q9SW93|SCA_LILLO3.00E-25Stigma/stylar cysteine-rich adhesin (Precursor)
trEMBLtr|A0A068V151|A0A068V151_COFCA5.00E-28Non-specific lipid-transfer protein {ECO:0000256|RuleBase:RU000628}
TAIRAT5G593201.00E-21lipid transfer protein 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000086270397271206+
Transcript Sequence

Network for GWHGAAEX016590

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14368.5LTP_2201136.90E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006869Biological Processlipid transport
GO:0008289Molecular Functionlipid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.770
SRR2545915Juvenile tuber0.350
SRP108465SRR5643513five period of Gastrodia elata0.340
SRR5643514five period of Gastrodia elata0.640
SRR5643515five period of Gastrodia elata0.790
SRR5643524five period of Gastrodia elata0.280
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.690
SRR5643658five period of Gastrodia elata0.130
SRR5643659five period of Gastrodia elata0.270
SRR5643660five period of Gastrodia elata0.450
SRR5643661five period of Gastrodia elata0.150
SRR5643662five period of Gastrodia elata0.000
SRR5643663five period of Gastrodia elata0.120
SRR5643664five period of Gastrodia elata0.280
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.490
SRR6049655Rhizomagastrodiae_C368-T10_good_10.000
SRR6049656Rhizomagastrodiae_C368-T07_good_10.270
SRR6049657Rhizomagastrodiae_C368-T07_good_11.480
SRR6049658Rhizomagastrodiae_C368-T04_good_11.550
SRR6049659Rhizomagastrodiae_C368-T04_good_10.910
SRR6049660Rhizomagastrodiae_C368-T01_good_10.000
SRR6049661Rhizomagastrodiae_C368-T04_good_10.170
SRR6049662Rhizomagastrodiae_C368-T01_good_10.500
SRR6049663Rhizomagastrodiae_C368-T01_good_10.000
SRR6049664Rhizomagastrodiae_C368-T10_good_10.660
SRR6049665Rhizomagastrodiae_C368-T10_good_10.660
SRP279888GastroGastrodia elata tuber 0.82
JuvenJuvenile tuber2.08
Mother_GastroMother tuber of Gastrodia elata 0.60
Mother_JuvenMother tuber of Juvenile 2.56