Detail information of GWHGAAEX016591/evm.TU.scaffold_78.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743788838|ref|XP_010922766.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g11460 [Elaeis guineensis] |
| Swissprot | tr|Q9CAY1|PP223_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At3g11460 |
| trEMBL | tr|C5XN96|C5XN96_SORBI | 0 | Putative uncharacterized protein Sb03g038140 {ECO:0000313|EMBL:EES01665.1} |
| TAIR | AT3G11460 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 272098 | 279386 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016591
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 225 | 248 | 0.023 |
| PF01535.19 | PPR | 255 | 283 | 2.20E-07 |
| PF01535.19 | PPR | 330 | 356 | 0.0011 |
| PF01535.19 | PPR | 358 | 388 | 2.50E-06 |
| PF14432.5 | DYW_deaminase | 529 | 653 | 2.60E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 29.300 |
| SRR2545915 | Juvenile tuber | 28.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 53.140 |
| SRR5643514 | five period of Gastrodia elata | 51.520 | |
| SRR5643515 | five period of Gastrodia elata | 48.400 | |
| SRR5643524 | five period of Gastrodia elata | 49.390 | |
| SRR5643525 | five period of Gastrodia elata | 52.190 | |
| SRR5643528 | five period of Gastrodia elata | 31.960 | |
| SRR5643658 | five period of Gastrodia elata | 49.030 | |
| SRR5643659 | five period of Gastrodia elata | 65.600 | |
| SRR5643660 | five period of Gastrodia elata | 60.270 | |
| SRR5643661 | five period of Gastrodia elata | 69.100 | |
| SRR5643662 | five period of Gastrodia elata | 59.270 | |
| SRR5643663 | five period of Gastrodia elata | 58.270 | |
| SRR5643664 | five period of Gastrodia elata | 62.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 53.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 24.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.320 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 41.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 41.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.41 |
| Juven | Juvenile tuber | 75.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.53 | |
| Mother_Juven | Mother tuber of Juvenile | 59.43 |