Gene detail

Detail information of GWHGAAEX016594/evm.TU.scaffold_78.15

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4198	5.00E-49	RNA-binding Ran Zn-finger protein and related proteins
nr	gi\|695041530\|ref\|XP_009408374.1\|	3.29E-162	PREDICTED: zinc finger protein VAR3, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q8S9K3\|VAR3_ARATH	1.00E-49	Zinc finger protein VAR3, chloroplastic (Precursor)
trEMBL	tr\|A0A059DHN1\|A0A059DHN1_EUCGR	3.00E-140	Uncharacterized protein {ECO:0000313\|EMBL:KCW89939.1}
TAIR	AT5G17790	5.00E-49	zinc finger (Ran-binding) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	326475	340005	+

Transcript Sequence
>GWHTAAEX016594 CTACAGTATCACTTGAATTTTGATAAAATCTATAGATATGCTATTTCTTGAATTAATAATAGAGTTGGGGTTAGTTGACTTTTGTTTGTCGAGCTCAGTTCAAGAGCTATTTTATCAAGCGGGGCATGGGCCGTTGATGAGCTAATTTCGCTCAATTGCACCAGCAGATGTCATTATAAAGTTTATTGGTAATTCAATAAAAAGTTTTAGGTGTTAGATAACTACTTAGATTTGAATGTCATAAGAACTATTATTTCAAAAAATATAGTTAAAGCAAGACTCAAAAAAAAAACACAACAAAATTGTGCTCTAAAGCATAAATTTTATAGATATTTTGTGGTTCCAAGCTATCTTCTTTTCACATCTTAAACAAAATTCTTGTTCCTCAAGTTCGAACTTCATTGTCACTGTTGTGGTTGCCATGAGTCACATTGGCGTTTTCTGTGGATATAATTTGGTTGAGGTTCGTCATCGCTGTTGCCATCTCCACGAGTCACATCGGTGATTTTCGGTGAAACCTTATGACCGTGCTTCATCATCGTAGTTAGAATAAGTGGGCCCATATAGAATAGGCCGATGCTTTTGGTTACCGACCCAAGTGCCGTAGTAGATCGACATGTAGGTGCGCTCGAGCGATAATCAAGGCGCCTACTCTCTTTTTTCAATTATTGAAAGGCTTGGTGCGCTCAAGCGCCAACACAGCCCGGTACTTGGGCGCACCCAATGGCTGGGCTCTCTGTTATCTAGATTCGTGGGTGTACTCAAGCGTCAGCTTTAGGTTATTTAGAATTTGGGCTCTTTAAGAAAATGAATAAATGGGACCTTGGTCGTGCCCTTATAACATTTGAGTCTGGTGCTTGGGGGAGCCATTGTGCCTGCAAGGCTCTATATATAAATGAATATTTTGGCGCTTGGCACGCCCAAGCGATAGCTCTGTCTGGTGCTTGGGCTCGCCCAAGCGCCTGCACGGCTCTATTTCTAAATAAATATCTAGCACTTGGGTGCTCAAACTCTAACTAGCTTATAAAATAAATAACGAGCTAAAGTTTTCAACAAAATTCACTAGTAAAATATTTTTGAAGTGATGCTATATGATCAGCCTTGTATTATAATGCATGAGTGAAAGCCGAAATGGCTGTTTCTATTTTAGAAGATCTAGCTTATGGTAGGCCTGACTAGGTTCTCCAACCAAAGGCATGGCTTTTAATTCATATGATAAGGCACACTGGTTTTATAATAACTATGCTAAGAGATTATGGAAGGACCATCTTAGTAACAGAGAAATGGTACTATACTTTTATTCAAATATCTTTGTAAAAATGCAGGGGCTAAATTTAAAAATAATCAACAAAAGAATAAAAAAGTAAAAACTTTACAAGTGGACAAATTGTAAGGTAGAAATATGCTTTCAAGTATCATCAAATAATATATGGGAAATACATAGACTGCATAACCAATATAATTGTCAACCTGTTAACCCTAATAATAGATCCTTCATGTTAAGCTTACACAAATTGACATCTTCAGCCAACACTGATTCATCACTGTAAAATAGATCTGTTGAGGCCTGATATTAGTGGATAAATATCAGTTAAATGAAAATAAGTATGGGAGGGTTGGAGTGTTGCGTATAGAAATTAGACACTATCAATATGATGATCATCACTGAATGTTGTGAAAGAGTGTGAATTCATATTTCAATAAATATTTGTGCATAAAGCTAACATTTACTCGCTTAATTGATAAGTTTGAACATGCTGTAACTCTGATTACGCAAAAATGAGTTGGTAGAAAATTTTAAATCTAAAAAGAGAACCTTTAACTATTTGTAACAATTATACGGCTTTGTGGTTCTTCCAACATCTGTTCTCGGGCTCTCTCTGCTTTGATATCTTTCTATACTACACGCCCTAAGCATAAAACCTCCACAGTAGAGCCATAGAGGCACTTCTGCCATCGATGCCCCGCGGTTTGAAGATCCTCATACTCCTCTCGACCCCTCTCCCTCTCCGCCCCTCCTTTGGAATCCGCCTTGCCCGTCATTTTCCTGTTCCTCTCGGATCCCTCTCCTACACCCCCGCTTTTCATCGCCGTTTTCTCTCTGCCGTTCCCTATTCAAAGCTTGGGTTTTCCATCAGAGCGGCGGAGCAATCTCGCACGCAGGCAGTTGCGCAAGAAGGATACCGCGATGCATCTTCTTTGTATCCTGACTTCAAGGATTCGTGTTCCGAGTGGAATAAGCTGACTCACCATCTCTTAGCTAGGGGTTACTCTCGGCGTCTGGCTACGCCCGTCGATCAAGATGATTCTGTATGGAAGCTTAAGGATTTGCCTGAGCAGTTTTTGAAATATGCAGAGGTTTGTTTAGATTTTGCAAGAAAACGACCTGAAATATTGAGGCTTCTTACAAAGAAACATGTAAAGACAATTGAAGAGAATGTGACTCCTTTTTTGTTTAAGAATGATGAATTGTCTGTGAGCCGCATGAAATTGTTCTTGAGTGGCGATGCGAATACTGCTCTGGAACCCGAGACAGCACAAACTATTGATATCATGCAGTACTTGCTGAGCTATATATATAATCTCTACTTTTCTTCCAATGGGAATCAGTTTAAAGCTGATGAATATGTTGAAACATCTGCGCGCAATTTATTTCAGGAGTTATTTAGTATCAGTGGGACAGTTAGGACTTCTATATTTGCAGAACCAACAAAGACACTTCCCCTGGGCAATGAGCAACTGTCAAAGTTTTCTGGGAAAAGTTTTTTGATGAGAAGGGGCGATTGGATTTGCCAAAAGTGTACTTTTGTGAATTTTTCTAGGAACAATAGTTGCCTCGAATGTGGTGAATCTCGACCTAAAAGGCAGTTAACAGGTTCAGAATGGGAGTGCCCTCAATGCGATTTCTTCAATTTTGGAAAGAATACCTCATGTCTGAGGTGTGACTGCAAGCGTCCTGGTAACATCCCTGATGGTATTTCCGATTTAATCAGCCATAGTCAGGATAGAATGTTAAGCCGATCATCAACTCAGTCAGGGAATACGTCTACTGATGGGAATAATAATTGTGCATCAGCTTATGGAAGTTCTGACTTTTCGCAGCTTAGGCAGAATACGGTGTCCAAACAGGGAAGAAACTCTGACCAACATATCCCTATTGTTCCTTTGCCTTCAGATATGTTAAAAAAAAAACAGGATTCAAACATGGGATTGTGGCATTTATCAGATAAAGGAATCTCATCATCTTCAAATACCAGTGATTTTATTGATTCTTTGTTCAACAATTCTGAGAACTCCATGAAGGGCAATAACAACAAAGATGCATCATTGCGATGCTCTCAGATGGTATCTGAACTGGAGAATGCCAGAAATCCAGCAACAAGTGTGTCCAATGAGGACTTCCCAGATATCATGCCAATGTGGAAAGGCGAAAGCAGATTTGTAACCAGCAGGAAGAAGGATCGTTCCCTGGAGGCTTCTTCTGCATATAAACGACGCTTAGCCATGGAAAAAGCTAATAACTTTGATTCCGTACCATTTGTGCCTTTCCCTCCAGGTTATTTCGCTAGGAAAGATAATCAGCCAGCTACTGATTCCACTGAGAGCATTACTGCAACTATGGATAAAGTTGAAGGCCAAGTGCCCGACAGTAGCAACTCAGGGATAAGTACCGCAAAGAATAGCAATCTCTCACACGATGAGTCAACCTCGCATTCATCTCCACTGCCCGCTAACACTTGGAAGGATAGAAGTTCTTACTGTGGACTGGCGGTAAATTCAACTCAGCAGCAACTGAACGATGTGGCTGCTGCTTCACTCCAGCAGCCATGGGAGCATCAGGATACAGGCAATATTCCAAGTGGGGAATATTCTGGCAAGAGTTTGGAAGGCTCCTGTGTTAAGGAGATCAAACCGTTGGACATGTCTGAGGAGGCAAAATCTGAGAGATGGTTTCTCAGAGCCGCTCAGATTAAGGATATCTCGGAGCTCAGTCAAATCCCCGATGAAGATTTTCCGGAAATCATGCCTTTACGAAAGGGTGTGAATAGATTTGTTGTCAGCAAGAGGAAGACTCCTCTTGAGAGGAGACTGACTTCTCCACTGTACAGACGAAACTTGCCTGTTGTGAGTTCTGAACCTGAGAAGCAAGATACTGATAATTGAAAAAAAAATAATCAAAAGTTCATGCAATTTTCGTCATCATCAAATTTACTACTTGATTCAAAGTTTCATTCTTTGTTATTTATGCTTGTAATTTTAAAGCTGTCTTCTTTGATCCTTAGCTTAATGTGCATTTTTAATTTTTTATTTGTTATTTTTGGGGAGAACTTTATACATTACTTCTGAAACTTTTATATTTATGAAATTGCCATTCTTAGC

Network for GWHGAAEX016594

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00641.17	zf-RanBP	272	300	7.60E-06
PF00641.17	zf-RanBP	306	333	0.0002

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.460
SRP064423	SRR2545915	Juvenile tuber	6.920
SRP108465	SRR5643513	five period of Gastrodia elata	6.310
	SRR5643514	five period of Gastrodia elata	6.380
	SRR5643515	five period of Gastrodia elata	7.740
	SRR5643524	five period of Gastrodia elata	6.350
	SRR5643525	five period of Gastrodia elata	7.150
	SRR5643528	five period of Gastrodia elata	8.870
	SRR5643658	five period of Gastrodia elata	7.990
	SRR5643659	five period of Gastrodia elata	7.830
	SRR5643660	five period of Gastrodia elata	8.220
	SRR5643661	five period of Gastrodia elata	8.020
	SRR5643662	five period of Gastrodia elata	8.150
	SRR5643663	five period of Gastrodia elata	8.130
	SRR5643664	five period of Gastrodia elata	6.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.990
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.690
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.680
SRP279888	Gastro	Gastrodia elata tuber	8.52
	Juven	Juvenile tuber	6.21
	Mother_Gastro	Mother tuber of Gastrodia elata	17.44
	Mother_Juven	Mother tuber of Juvenile	14.44