Gene detail

Detail information of GWHGAAEX016605/evm.TU.scaffold_78.30

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2722	Predicted membrane protein
nr	gi\|695010008\|ref\|XP_009391659.1\|	PREDICTED: uncharacterized protein LOC103977776 isoform X1 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0U0Z0\|M0U0Z0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P16830_001}
TAIR	AT5G01990	Auxin efflux carrier family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	561445	617810	+

Transcript Sequence
>GWHTAAEX016605 CTTTAAATTTTGTTGTAGCTACAGAACTTCAAGAGAGAATGTGAAGCTTTTAACCAGAGCATCATGATTAAAAGCAAAGAGCAGATTAAGTTAATAGCTTTACTAATTGCTGTCAGAATCCGTAAAGATATGAATCAGTGCAGGAGGAAAAGTTTGACTGAAAATTTTAGAAGTTGAAGCTTGCCGATATAAGAACTTTTGAGCCCAGCTGTCAATCTAATTACTAGCTTTGTTAATGAGAGGAGTCCAATGAACAGATTTAGTGGTTAGACCTGATATCAAAATGCCCAAGTATTTCAAAGGCGAAGTGTTGATATGAAGAACCATGATGATACATGCAAGATCCTTGTATTAGAGACATTCTTGAAGAAGCAAATAACATATTTCTCACCATTTAGGTTAAGCAATTAAATTTTTTTCCACAATAATGCTTAAAACCATGAAATTTTTTTTGGGATGCTTCACCAATTAGATACTAAAGATACTTTTTAGCCTTGCTGAAAAAAAAGCGAAAACGATAAACAGGAATTTGGTCGGACGGTTTGCTCGGGTTTGTATTAATTGGCACCATTGTAAGTTCCATATAAAGTCCGGGTAGTTTCCTCTGACAGCACACTAGTGAACGTTGTCTCTAATCTCATTCCCGTTATAAATTATTGGTGAATCGCGGAAACTGTATTGCGCAGGAGGACGGCGACGATGCTGCCATCGAAGCTTCCTGCATTTCAAATCTTTCGATTTCTTTTGCCTTTTTGATTTTCCAGGGTTTATCAGCGAGGAAGAATCGCTCAGGTTTCACGTTCTGTTCTACCCGAAGACAAGAAGTGGGCAATGCAAGTGACCGGGAGTCGTTCTCTGTGAGTTGCGAACAAGGTTCTTTGGTGCTGCGACGGAATTGAGTTACGTGAGCTGATGCCGTAAAAATTTAATCTTGATTAAGAGGTTTCAGTGGGAGGACGTCATGGAAAGGACACTGCTTGCCATTTTATTAGATGATCAAGCTGCTCGAGGAGAATCCATTTTCAACATGATAAAGTTTGCAGTGTTGCCTATAGCAAAAGTTTTCACCATGTGCTCTTTAGGCTTTCTTATGGCCTCAAAGCATATAAATATTCTTCCTGCTACTGGCAGAAAGATTCTTAATGGGCTTGTGTTCTCTCTTTTGCTTCCTTGTCTAATTTTTTCTCAACTCGGACGAGCAATTACATTGCAGAAATTGCTAGAATGGTGGTATATTCCTGTCAACATTATAATGGGTACAATATCAGGTTCCTTGATTGGCTTAATTGTTGCATCTCTCATACGACCTCCATATCCATACTTCAAGTTCACCATCATACATATTGGCATAGGTAATATAGGGAATATACCACTGGTCTTAATTGCTGCTTTATGTCGAGATGAAACTAATCCATTTGGTGATCGCCACAAGTGTCGTGAAACTGGAAATGCATATATTTCGTTTGGTCAGTGGATTGGTGCCATTATTTTGTACACATATGTGTTTCGGATGCTTGCTCCACCACATGGCAAAACCTTTGATAGTGTTGAAAAGGAAAGGCTTCCAATCAAGGACCCTGCTGTTGAAGGGATGCTGCCATTTAATGATTCACTCACCATGATAGAAAAAATATCCACCAAGGTTTCTGGTGAGGATGTCAAACCTGAACAAGTTCCCTTGTTAGCTCTAAAGGAGTCTAAGACTGAATATTCGACATCCAAAATGGTCTTTTCTAAAATATTTATTGTCCTGGGGAAGCTAAAACAGCCACCTATAATTGCCTCTGTATTGGCCATTGTCTGTGGTGTCATGCCATTTTTAAAGAGCCTAATCCTGAATGATGATGCTCCATTCTTTTTTTTCACTGACAGCTGCCTTATCCTTGGGGAGGCTATGATTCCTTGCGTTTTACTAACCTTGGGTGGCAATCTTGCGGATGGCCCTGGTGTAGGAAGTAAAAGAATTGGTCTCCGCACAATGGCTGCCATAGTATTTGCACGGCTGCTCCTCGTTCCTCCGGCAGGCCTCGGCATCGTCACATTTGCAGATAAGCTTGGATTCATCCCAAAGGGCGACAAGATGTTTAAATTCGTTCTCCTGCTGCAGCATTCGATGCCAACTTCAGTCCTCTCAAGTGCTGTTGCCAACTTGAGAGGATGCGGGAAGGAAGCTGCTGCTGTTCTGTTCTGGGTTCACATATTTGCTGTTTTCTCTATGGCTGGATGGATAGTTCTTTATTTGGCCATACTATTTTAGATTTTTTGTATATCCTTCCTTCCATCAAAGAACACTTTGGGAATCATAGGGTTTCGGCATAGGTTTCTTAACAATATATTTAAGGAAGTTTTAATACATGCCCTAGAAATATTTCTTATTTGGTGCTTTTCTTTCTTTCTATGTCAATAGATGAAGAGTATGAACAGATGCTAGCTTTGTAAACTTCAAGATTTAGGTGTGGAATATCAAGTACACTGTTTTTGTGTAGTAATCTCCTTTATTTTCATTGACTGAAAGTCTAATGCATTTTAGTTTCTTTATACATTTATTATGCATTATCAAATGAGCTAGCCATGAGTTAGTTTTCG

Network for GWHGAAEX016605

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03547.17	Mem_trans	28	423	6.10E-65

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.070
SRP064423	SRR2545915	Juvenile tuber	7.140
SRP108465	SRR5643513	five period of Gastrodia elata	9.980
	SRR5643514	five period of Gastrodia elata	11.840
	SRR5643515	five period of Gastrodia elata	10.170
	SRR5643524	five period of Gastrodia elata	12.740
	SRR5643525	five period of Gastrodia elata	3.390
	SRR5643528	five period of Gastrodia elata	4.180
	SRR5643658	five period of Gastrodia elata	3.960
	SRR5643659	five period of Gastrodia elata	6.650
	SRR5643660	five period of Gastrodia elata	5.540
	SRR5643661	five period of Gastrodia elata	7.130
	SRR5643662	five period of Gastrodia elata	4.580
	SRR5643663	five period of Gastrodia elata	5.470
	SRR5643664	five period of Gastrodia elata	3.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.660
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.530
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.280
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.700
SRP279888	Gastro	Gastrodia elata tuber	3.10
	Juven	Juvenile tuber	4.43
	Mother_Gastro	Mother tuber of Gastrodia elata	4.47
	Mother_Juven	Mother tuber of Juvenile	5.03