Detail information of GWHGAAEX016611/evm.TU.scaffold_78.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743826588|ref|XP_010933339.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Elaeis guineensis] |
| Swissprot | tr|P0C899|PP271_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At3g49142 |
| trEMBL | tr|W9SLI2|W9SLI2_9ROSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:EXC37464.1} |
| TAIR | AT3G49140 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000086 | 662383 | 680353 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX016611
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 97 | 144 | 1.40E-08 |
| PF12854.6 | PPR_1 | 198 | 228 | 2.30E-05 |
| PF13041.5 | PPR_2 | 272 | 316 | 9.10E-11 |
| PF13041.5 | PPR_2 | 371 | 417 | 1.20E-10 |
| PF01535.19 | PPR | 448 | 470 | 0.084 |
| PF14432.5 | DYW_deaminase | 546 | 669 | 2.90E-36 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.690 |
| SRR2545915 | Juvenile tuber | 1.680 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.320 |
| SRR5643514 | five period of Gastrodia elata | 2.920 | |
| SRR5643515 | five period of Gastrodia elata | 2.390 | |
| SRR5643524 | five period of Gastrodia elata | 2.470 | |
| SRR5643525 | five period of Gastrodia elata | 0.900 | |
| SRR5643528 | five period of Gastrodia elata | 0.750 | |
| SRR5643658 | five period of Gastrodia elata | 0.490 | |
| SRR5643659 | five period of Gastrodia elata | 1.910 | |
| SRR5643660 | five period of Gastrodia elata | 2.110 | |
| SRR5643661 | five period of Gastrodia elata | 1.850 | |
| SRR5643662 | five period of Gastrodia elata | 2.240 | |
| SRR5643663 | five period of Gastrodia elata | 2.120 | |
| SRR5643664 | five period of Gastrodia elata | 2.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.480 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.06 |
| Juven | Juvenile tuber | 4.73 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.21 | |
| Mother_Juven | Mother tuber of Juvenile | 5.44 |