Gene detail

Detail information of GWHGAAEX016612/evm.TU.scaffold_78.37

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|51477447\|gb\|AAU04631.1\|	6.95E-28	CENP-C [Triticum aestivum]
trEMBL	tr\|Q66LG7\|Q66LG7_WHEAT	3.00E-28	CENP-C {ECO:0000313\|EMBL:AAU04631.1} (Fragment)
TAIR	AT1G15660	2.00E-21	centromere protein C

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	687658	699015	+

Transcript Sequence
>GWHTAAEX016612 AGTCAGCCTCAAAGCAGAAGAGATCGTCAACATAGGCCTGGGCTTCCTATTCTTGAAGGATTCATGAAGGATTATGTTTTTAAGCTTCCTAGTGAGGCAACTACTAGTGAGTCTTCTCACATTGGGACTATGGCTGACTTATCCAAGACAGGCTGTGCTGATTCAAAAATCAGCCAAGTCAATGATTCACAAACTGTTGAACCGGGAAGCAAGCTCTTTGGGAGTGCAGAAACACGTGATGATACCAAAGTAGATGAGAAGCTTCATGATGAATTGAAGAGGCTGTTGTCTAAATGTGAAAAAGTATGTACAAATCCTGTGGACAAATCAAGAGGTCTTCCATTCTCTATATCAACAGAAAATAAGTCTGAAAGTCCCAAACTTAGAGAGATTTCTCCTGTCACAAATGATACTAAGTTTGACGACGTGCTGCCAAACATGAAAGAGCGTTTATCATTGATAATTCAGCAATTTAAATCATTCACCTCCCCTAAAAGTAATCATGATAGGCAGGATAAAGATTCAGGGGAACTAAGCTCTATTCCCAAAATTTTATACACTAATGGATTGGCAAAATTACTGAGCTATGATACAGACGTGCAGAGTAAAGAGTTAGGCAATCTCAAGTCAGACTGTAATGATGTTAGTGCTGTTGGGATAACAGAATTGGAACAGGAGACCTTGAAGACTAAGCTTCTTGATGCGGAGATAAAACTTTCAGTTGATCCTTTATCAGTCTTGGAAATGGCCGTGCCATTGACTGATGTACAAAGTGAACAAGCTAAAATAACAGCCTTGAATAGTGACATATTACAAAATCCTGCTGAAAGTCAACAACCTATGCTTTCGGATAATGAATCTAAAAATTTATCATTAAGCAAAAGCAAGGAATTTCATTCGAGATTGTCCGCAGATGCAATTCATTTTGATGGCAGCTTTAAAGAGGCTCAGAATTCTTCCATTAATTTGAATGTACCAAGGTTCAGTTTTGAGGATGAAATGCACTCTCCAGTGGACGTGACTTCTGAGAAAGCTAAGAATCTTGGCAAAAGAAAAGTTTCACAACGACGTAAAACTTGTTCGCATTCACAGCTTATTCCATCTACTCTTTGTGAGCGCCTTTCAGACAATGCTGTAGATCAACAAATGGAGCTACCATGTGAAGTACTTAATGGAAATACGGATCAGGGATGTTCAGAATCCTTAGGATCTCCAGACAGGAATTCTGAAAGAGAGGAACATCCTCCACACAGAGAAAAGAAGCTAAACGAAAAATTGAGAGGAAAAAGCAGTGCAGAAGGGTCTTCCAATAGGAATTTGGAAAGAGACAAATCGCAACGATGTTATGGAAAGAAGCAAAACAAGGATATGAGAAGGAAAAGTCTTGCAGGCGCCGGCACTGTGTGGACCAGTGGAGTTCGCCGGAGCACTCGGATACGGGTGAAGCCGTTGCAGCATTGGTGTGGCGAGAGGCTGCTATACGGCCGGGTGCACGACAGTCTGGCGACTGTAATAGGATTGAAAAAATTGGAGACTCCGCCGGCGGACGGACGCAGAAAGAAGGCTACCATGAGAGTGGAGTCCTTTGTCCAAGAGCAGTTCGCTGATCTTGTGGCTAAAGCTGCCCTCTATTAATTAGTTCATTAAATAAATGTGTTCTTAATGCTGCTGCTGCTCGTTTGAAGAATATCATTAACATTTATAAACAATAGTTTGTTAGAATTTGATTTTTTTTAAAGAATTGAGGGTAACAGCCTAATATATTAAG

Network for GWHGAAEX016612

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.720
SRP064423	SRR2545915	Juvenile tuber	13.190
SRP108465	SRR5643513	five period of Gastrodia elata	6.210
	SRR5643514	five period of Gastrodia elata	5.340
	SRR5643515	five period of Gastrodia elata	3.970
	SRR5643524	five period of Gastrodia elata	5.150
	SRR5643525	five period of Gastrodia elata	1.530
	SRR5643528	five period of Gastrodia elata	0.690
	SRR5643658	five period of Gastrodia elata	1.750
	SRR5643659	five period of Gastrodia elata	9.270
	SRR5643660	five period of Gastrodia elata	12.990
	SRR5643661	five period of Gastrodia elata	8.630
	SRR5643662	five period of Gastrodia elata	7.650
	SRR5643663	five period of Gastrodia elata	7.570
	SRR5643664	five period of Gastrodia elata	8.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.920
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.270
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.140
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.990
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.860
SRP279888	Gastro	Gastrodia elata tuber	15.03
	Juven	Juvenile tuber	15.56
	Mother_Gastro	Mother tuber of Gastrodia elata	9.97
	Mother_Juven	Mother tuber of Juvenile	10.66