Detail information of GWHGAAEX016613/evm.TU.scaffold_78.38


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|22298912|ref|NP_682159.1|0DNA gyrase subunit A [Thermosynechococcus elongatus BP-1]
KOGKOG03550DNA topoisomerase type II
nrgi|743789508|ref|XP_010922922.1|0PREDICTED: probable DNA gyrase subunit A, chloroplastic/mitochondrial isoform X2 [Elaeis guineensis]
Swissprottr|Q5YLB5|GYRA_NICBE0DNA gyrase subunit A, chloroplastic/mitochondrial (Precursor)
trEMBLtr|A0A067KY13|A0A067KY13_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP41057.1}
TAIRAT3G106900DNA GYRASE A

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000086699810757815-
Transcript Sequence

Network for GWHGAAEX016613

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00521.19DNA_topoisoIV1155512.50E-151
PF03989.12DNA_gyraseA_C5916362.60E-07
PF03989.12DNA_gyraseA_C6406904.30E-09
PF03989.12DNA_gyraseA_C6967405.80E-06
PF03989.12DNA_gyraseA_C7447912.40E-06
PF03989.12DNA_gyraseA_C8178625.50E-11
PF03989.12DNA_gyraseA_C8759170.00042
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006259Biological ProcessDNA metabolic process
GO:0006265Biological ProcessDNA topological change
GO:0005524Molecular FunctionATP binding
GO:0003677Molecular FunctionDNA binding
GO:0003918Molecular FunctionDNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0003916Molecular FunctionDNA topoisomerase activity
GO:0005694Cellular Componentchromosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.760
SRR2545915Juvenile tuber20.370
SRP108465SRR5643513five period of Gastrodia elata11.940
SRR5643514five period of Gastrodia elata10.820
SRR5643515five period of Gastrodia elata9.880
SRR5643524five period of Gastrodia elata12.000
SRR5643525five period of Gastrodia elata3.650
SRR5643528five period of Gastrodia elata1.280
SRR5643658five period of Gastrodia elata1.280
SRR5643659five period of Gastrodia elata20.020
SRR5643660five period of Gastrodia elata20.420
SRR5643661five period of Gastrodia elata18.770
SRR5643662five period of Gastrodia elata15.820
SRR5643663five period of Gastrodia elata15.280
SRR5643664five period of Gastrodia elata18.580
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.390
SRR6049655Rhizomagastrodiae_C368-T10_good_115.260
SRR6049656Rhizomagastrodiae_C368-T07_good_117.760
SRR6049657Rhizomagastrodiae_C368-T07_good_118.200
SRR6049658Rhizomagastrodiae_C368-T04_good_114.260
SRR6049659Rhizomagastrodiae_C368-T04_good_112.570
SRR6049660Rhizomagastrodiae_C368-T01_good_119.440
SRR6049661Rhizomagastrodiae_C368-T04_good_118.470
SRR6049662Rhizomagastrodiae_C368-T01_good_125.230
SRR6049663Rhizomagastrodiae_C368-T01_good_119.750
SRR6049664Rhizomagastrodiae_C368-T10_good_117.840
SRR6049665Rhizomagastrodiae_C368-T10_good_117.840
SRP279888GastroGastrodia elata tuber 32.50
JuvenJuvenile tuber25.20
Mother_GastroMother tuber of Gastrodia elata 6.06
Mother_JuvenMother tuber of Juvenile 9.38