Gene detail

Detail information of GWHGAAEX016614/evm.TU.scaffold_78.39

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|375145012\|ref\|YP_005007453.1\|	6.00E-07	RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
KOG	KOG0118	2.00E-71	FOG: RRM domain
nr	gi\|695062455\|ref\|XP_009419696.1\|	6.32E-103	PREDICTED: UBP1-associated protein 2A-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|O80678\|UBA2B_ARATH	7.00E-72	UBP1-associated protein 2B
trEMBL	tr\|M0RE71\|M0RE71_MUSAM	8.00E-105	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P00440_001}
TAIR	AT2G41060	2.00E-71	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	766336	787499	+

Transcript Sequence
>GWHTAAEX016614 AGTGCTATACATTTGTAACATTTGACCTAATTCTTCCGCATTCGATTCTCAGCAAAAACCCTAAAATTCTAATGGCGGGGAAGCGGAAGCTGAACACCACTGTTATCGAGGTTGAGTCCGAGGACGAGGATCTCGCCAGCGTTTCGTCTGACAGCGAAGAAGACGGCGAAAATGAAGGAGAAGAGGACGGTGAAGAAGAGCTAGATGGAGATGAGGAGGATGTAGCGAATCATGCGGAGGAGGTGGAGGATGATGAGGATGACGATGACAACGATGTTGATGATAATGAGGACGAAGAAGAAGAGGAGGAAGAAGAAGAGGAGGAAGAAGACGAGGTGGAGGACTTCTCGAGCAAAGAAGCCATCCGCAAGCTCCTTGAGCCTTTTAGCAAGGACCAATTGATCGAAATTTTCAAGGAGGCTACTCTCAAGAATCCTTCGCTCGTATCTCGCATTCTCAAGGATGCTGATGTCGACACTATCCACCGAAACATCTTTATCCATAATCTCGGAGGTGAGGTCACCTCCGAAACCCTAGAAGCAGCCTTCACCCCTTTTGGCAAAATTGAGTCTTGCACGGCTGTCACTGAAAACACCACCGGGCGATGCAAAGGCTACGGATTTGTTCTGTTTCGCTCCCGGGCTGAGGCCAAGCTTGCTCTCAAGGAACCGTGTAAGAGGATTGGCAACCGGGTTGCCAGCTGCCAACTTGCTTCATTGGGCCCTCCTGGAAGCGGGCAGGCCCATGGGGATTATGCAGGCAGGAGGCTCTTCGTAGGCAATGTGAACGCCAGCTTAAGCCCGGATCGCCTTCTTGCATTCTTTTCGAAATTTGGAGAAATTGAGGCTGGGCCTGTTGGGATTGATCCTGAAACAAGGAGGTTCCACGGCTACGCAATTTTTATCTACAAGACTTTGGAAGGCTGTACTAAAGCTTTGGAGGAGCCGATCAAGTTTTTCGAAGGATATGAGCTTCACTGCAGAAAAGCTTATGACGCATCTAATAGGCATAAAAATACCCAGACGGCTTCAGCTGCTGCAGCAGAGGCTGTGCCTACTGGAATGCAGGCAAATAATTCTGCTGTTAATTATTCTTCTCCAGGTGCTTTTATGGTGCATAATATGCTACCAGGACCAACAACTGTGGTTGGGCAGCGAGGAAGTGGAGTTGGGATGCCTAATCCAGTAGGACTGCCTTCTGCACTGAGTGGGGGAACTGCTGGGGTACCTCCACGGTCTTATGTTATTCGTGATGCTAGCATTTCAGGTCAACCTTATGCGATTGGCGGCGCTGGAATTCCTACTACAGCTTATGCTGTTGGAGTGGTAGGATCGGCTAATAGGGGTTCTGGGATGGGTGTAAACAGCATAAGCCCAAGTGTTATCGGGAATTATGGATCCCTAGCAGCTCTTCAGGGTTTGGGGGCTTACCAGAATTCAACTTCTTCTACAGCTATGAGACCTCAGCCAGGATTTAGTTCTTTTGGAACAAGTGGGTTAGCACCATTCTATGGCCGCTAAGAATCTTGAAGTAGCCTCCTTCTGAAAAACTTGGTCAAATCTTGGATGGCAAGAAATCCTTCGCGTCCGCGTCCGCGTCGGCATCCCATTCCAAAACCGGCTAAATGCTCCTGCATGGTTTGCCATCAAAATATACAATTTATGCGTATATTTTTACTTTATTTTTTAGGACACATGTATTATTATTCAAAATATATTGCATGTATGTTTTGTTTATATTATTGTGTTGACGGACCGGACCTTTCACTTAAGCTATAGCACCCATGATCCAAAGTGGGCTAGTCGCGCTGACTCGAGCCTAAAGTGTCCTGGATTGGCTTCGGGTCAAAGGAAACCTGAATCTATTCACATGCCTATTCATATTTCATTAATCAAACGAGTTTCTTATATATTTATAAAATTAGCCTAGTTTTCTAATGCATGAAGATATGAA

Network for GWHGAAEX016614

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	141	207	4.60E-13
PF00076.21	RRM_1	233	301	2.70E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	36.460
SRP064423	SRR2545915	Juvenile tuber	36.550
SRP108465	SRR5643513	five period of Gastrodia elata	62.060
	SRR5643514	five period of Gastrodia elata	64.120
	SRR5643515	five period of Gastrodia elata	58.930
	SRR5643524	five period of Gastrodia elata	64.610
	SRR5643525	five period of Gastrodia elata	54.030
	SRR5643528	five period of Gastrodia elata	55.700
	SRR5643658	five period of Gastrodia elata	60.720
	SRR5643659	five period of Gastrodia elata	58.670
	SRR5643660	five period of Gastrodia elata	54.980
	SRR5643661	five period of Gastrodia elata	56.140
	SRR5643662	five period of Gastrodia elata	54.760
	SRR5643663	five period of Gastrodia elata	47.480
	SRR5643664	five period of Gastrodia elata	47.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	54.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	55.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	54.560
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	57.690
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	48.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	54.980
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	57.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	48.750
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	50.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	52.180
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	73.570
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	73.570
SRP279888	Gastro	Gastrodia elata tuber	47.35
	Juven	Juvenile tuber	68.63
	Mother_Gastro	Mother tuber of Gastrodia elata	42.93
	Mother_Juven	Mother tuber of Juvenile	62.26