Gene detail

Detail information of GWHGAAEX016618/evm.TU.scaffold_78.44

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|430744433\|ref\|YP_007203562.1\|	7.00E-24	WD40 repeat-containing protein [Singulisphaera acidiphila DSM 18658]
KOG	KOG0032	2.00E-76	Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
nr	gi\|71152362\|sp\|Q43531.1\|CCAMK_LILLO	0	RecName: Full=Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase; Short=LlCCaMK [Lilium longiflorum]
Swissprot	tr\|Q43531\|CCAMK_LILLO	0	Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase
trEMBL	tr\|W5A0V7\|W5A0V7_WHEAT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_1BL_30ECC5A18.1}
TAIR	AT3G10660	2.00E-76	calmodulin-domain protein kinase cdpk isoform 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000086	837382	853632	-

Transcript Sequence
>GWHTAAEX016618 AATGTACGCTCAGTCCAGCCTCTAACCCCTCAGAAACCACGGTGAACTCAAAAAGGCAGCTCGAACCGAGGGAAGCAAGCGCCGTTTATAGGGCATCAGTTGTCTGCCAATTTTTCATCCCGAAGTCATCGATTGAGCTTTTTTTATTATCTAAATACAGCGGATAGCAGAAAGCTTGATTTGAGAACTTTGCATTCCCCGTTTAGCTTCCGCTTGAGGCCGATGTCAAGTAGGGAAATCAGAAAACTCACCGATGATTATGATGTGATTGATGTTCTTGGCAGAGGAGGTTTCTCTGTCGTGAGAAAAGGAGTAGGTAAGCTTAGTGAAAATAGAAGGCATGTTGCCATAAAGACACTCAAGAGACTAGGGTTCATGCCTCAGGGAATGAATCGAGGTCCTCCTGGGCAGAAGCCTCCAACATTGAAGCAGGTATCCATTTCGGATGCTTTGCTAACTAATGAGATTTTGGTCATGAGAAAGATTGTCGAAGATGTTTCTCCTCATCCCAATGTGATCCACCTCTATGATGTTTATGAAGACATGCATGGAGTTCACCTTGTACTCGAGCTTTGCTCTGGCGGAGAGCTTTTTGACAGAATAATTGCCCATTCGACTTATTCAGAGGTCGAAGCAGCTGAAGTGGTGCGCCAGATTGCTTGCGGCTTAGGAGCTCTTCACAAAGCCAGCATAGTTCACCGTGATTTGAAGCCAGAGAACTGCCTATTTCTCAACAGCAGCGAGCGTTCTCCGCTGAAGATAATGGACTTTGGCTTGAGTTCTGTGGAGGATTTTACTGATCCGATAGTTGCACTTTTTGGCTCGATTGATTATGTCTCTCCCGAAGCTTTATCTCAACGGCAAGTGTCTTCAGCTAGTGATATGTGGTCACTAGGTGTGATCTTGTATATTCTGCTCTCGGGGTGCCCGCCCTTTCACGCCTCTTCAAATAAGGACAAGCAGCAGAAGATTTTAGCTGGTGACTTTAGCTTCGAAGAGAGCACTTGGAAGACCATTACTTCTTCAGCAAAGGATTTGATCTCCAGCCTTTTAGCCGTTGAGCCATACCGGAGACCAACTGCCGAAGATCTTTTGAAACATCCTTGGGTTATCGGAGATTGTGCAAAGCAAGAGCTTATTGATGCTGAAGTTGTCTCTAGGCTGCAAAGTTTCAATGCTCTGAGAAAATTCCGTGCGGCTGCAATAGCTAGTGTATGGAGCAGCAAAGTCTTCTTAAGAACAAAGAAACTGAGGAGCCTTTTAGGGTCCCATGATCTCACGCCAGATGAACTTGAGAACCTCCGCACAAATTTCAAGAGGATATGTTCAAATGGAGACAATGCTACTCTAGAAGAGTTTGAGCTAGTTCTTAAAGCAATAAACATGGAATCTCTCATTCCTTTTGCTGCTCGTGTGTTCGATATATTTGATAACAACCGCGATGGAACTGTTGATATGAGAGAGATCCTCTGTGGGTTGTCGAGCCTCAAAAACTCTCGAGGTGACAGTGCGCTAAGGCTTTGCTTTCAGATGTATGATGCCGATCGATCGGGATGTATCAGCAGAGAAGAATTGGCGTCAATGCTCAGAGCCTTGCCTGAAGACTGCCTTCCAGCAGACATTACTGAGCCCGGGAAACTGGACGAGATATTTGACCAAATGGATGCAAATAGCGACGGAAAGGTCTCTTTTGAGGAGTTCAAAGCAGCCATGCAGAGAGATAGCTCCCTTCAAGATCTCGTCCTCTCTTCGCTGCGCCCTAACTAATTAGTTCTTCGCTCTCACTTTCTCTACACTGGAAGCATCTGCATTCCCTCTCCTTTCTGCAGTTTTAAACTGGCAACTATTGGTTTCTTTTATAATCCTTTTTGGAACAATAGAGTTTCATGCAAGATCTCTCTTTCTTTTATGTAACTGACTGACAATCCGAAGAGAAAAAGAAGCGAGGGAAAAAATTTGGTGTTTTATGAGATGCCAAGCTTTGTAATTTATGTTAGTTTTGAATAAAGAGAAGGTTGAATTTTGTTCGTGAAAGGAAGCTCTGTTGTTAGTATTGTGAACTTTGATTGGGTTTCATATGTGAATGCGTAATTTGGTGTTTTATGTGTGATGTGTGCAGACTCAAGCTTTAGGTGAGCACCATTATTGAAGGGCATAACATCATGAATGATTATACAATAATAATATAATAACAAGCACTTTAATTTAGC

Network for GWHGAAEX016618

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	13	296	2.60E-59
PF13202.5	EF-hand_5	398	414	0.016
PF13499.5	EF-hand_7	429	498	4.50E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CAMK1-DCAMKL

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	132.600
SRP064423	SRR2545915	Juvenile tuber	125.720
SRP108465	SRR5643513	five period of Gastrodia elata	60.940
	SRR5643514	five period of Gastrodia elata	62.870
	SRR5643515	five period of Gastrodia elata	52.230
	SRR5643524	five period of Gastrodia elata	58.140
	SRR5643525	five period of Gastrodia elata	70.110
	SRR5643528	five period of Gastrodia elata	57.290
	SRR5643658	five period of Gastrodia elata	74.270
	SRR5643659	five period of Gastrodia elata	86.080
	SRR5643660	five period of Gastrodia elata	106.510
	SRR5643661	five period of Gastrodia elata	85.830
	SRR5643662	five period of Gastrodia elata	102.080
	SRR5643663	five period of Gastrodia elata	94.910
	SRR5643664	five period of Gastrodia elata	129.690
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	93.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	95.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	75.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	99.770
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	82.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	97.730
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	81.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	77.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	64.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	64.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	73.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	73.300
SRP279888	Gastro	Gastrodia elata tuber	83.97
	Juven	Juvenile tuber	106.69
	Mother_Gastro	Mother tuber of Gastrodia elata	53.35
	Mother_Juven	Mother tuber of Juvenile	92.85